Detailed information of component protein


Summary

Component ID T6CP016209
Component protein type TssA
T6SS ID (Type) T6SS01299 insolico (Type i1)
Strain Pseudomonas sp. JY-Q
Replicon chromosome
Sequence Protein sequence (489 a.a.); Nucleotide sequence (1467 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) AA098_RS18505
Coordinate (Strand) 4078014..4079480 (-)
NCBI ID WP_064614881.1
RefSeq NZ_CP011525
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2e-63 224..472
ImpA_N PF06812.14 1.1e-20 16..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-488 MSLVAEVEAQEITRLLAPIDTQVPAGLFDVEDETYQAIDQEMVKLGGLQEASIDWDYIEEASGQYLERQCKHLRIVAHLSVAWLRSGCWEGWGFTLALLGGMIEGYWETAHPAPGPKGFLTKRKVVGLVLNRLIDALPRLDRFTYTPAHAAAAKGALARLLRQQEAAQLDPAVLVELERLLHKHTALANGIGECDAPKAPVESPQPAPLADVIATPKPCLSGGNERETRRAILSMAELINQQDPYDPTGYQLRRFGLWAHIQAAPQTRQGNRTELMAVPRDIASDYEEAIAGTVIDAALLQRVEKSVSASPFWIRGSFLAATAASRLAMGEVAEAIRAATARFVLRMPALQQLCFSDGRVFVDDQCLAWLKGADGQSGQAGASQEFTTLREELVSQLESGGVEPVLLRLQGMQAGFRAPRERCHTTVIAADLLAARGVSWLAQDLCAGVVRTMQQTTASDWEPEVFERLQQYASSHLLADRNKEQEPR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9773 - -


  Protein sequence: 489 a.a.    

>T6CP016209 NZ_CP011525:c4079480-4078014 [Pseudomonas sp. JY-Q] [TssA]
MSLVAEVEAQEITRLLAPIDTQVPAGLFDVEDETYQAIDQEMVKLGGLQEASIDWDYIEEASGQYLERQCKHLRIVAHLS
VAWLRSGCWEGWGFTLALLGGMIEGYWETAHPAPGPKGFLTKRKVVGLVLNRLIDALPRLDRFTYTPAHAAAAKGALARL
LRQQEAAQLDPAVLVELERLLHKHTALANGIGECDAPKAPVESPQPAPLADVIATPKPCLSGGNERETRRAILSMAELIN
QQDPYDPTGYQLRRFGLWAHIQAAPQTRQGNRTELMAVPRDIASDYEEAIAGTVIDAALLQRVEKSVSASPFWIRGSFLA
ATAASRLAMGEVAEAIRAATARFVLRMPALQQLCFSDGRVFVDDQCLAWLKGADGQSGQAGASQEFTTLREELVSQLESG
GVEPVLLRLQGMQAGFRAPRERCHTTVIAADLLAARGVSWLAQDLCAGVVRTMQQTTASDWEPEVFERLQQYASSHLLAD
RNKEQEPR*

  Nucleotide sequence: 1467 bp    

>T6CP016209 NZ_CP011525:c4079480-4078014 [Pseudomonas sp. JY-Q] [TssA]
ATGTCGCTGGTAGCTGAGGTCGAGGCGCAAGAAATCACACGCTTGCTCGCACCCATTGATACCCAGGTGCCGGCGGGGCT
GTTCGATGTGGAAGACGAAACCTACCAAGCCATTGACCAGGAGATGGTCAAGCTGGGTGGGCTACAGGAAGCCTCTATCG
ATTGGGACTACATCGAGGAGGCCTCTGGTCAGTATCTGGAGCGACAGTGCAAGCATCTGCGGATCGTCGCGCACTTGAGC
GTTGCGTGGCTGCGCAGTGGTTGTTGGGAGGGCTGGGGGTTCACCTTGGCGTTACTGGGCGGAATGATCGAGGGCTATTG
GGAAACCGCTCATCCAGCGCCTGGTCCGAAGGGCTTCCTGACCAAGCGCAAGGTCGTTGGCCTGGTGCTCAATCGCTTGA
TCGATGCGCTGCCGCGCCTTGATCGTTTCACGTACACCCCGGCTCACGCCGCAGCGGCGAAGGGTGCATTGGCCCGTTTG
CTACGTCAGCAGGAAGCCGCCCAGCTTGACCCGGCTGTTCTGGTTGAGCTGGAGCGCCTTTTGCACAAACACACGGCGCT
TGCCAACGGTATTGGTGAGTGCGATGCGCCCAAGGCCCCGGTGGAGAGCCCCCAACCTGCGCCGCTGGCGGATGTCATCG
CCACCCCGAAACCCTGCTTGTCGGGCGGTAACGAGCGCGAGACGCGCCGAGCCATCTTGAGCATGGCCGAGCTGATCAAT
CAGCAGGACCCTTACGACCCGACCGGCTATCAACTGCGGCGCTTCGGTCTGTGGGCCCACATTCAGGCCGCACCGCAAAC
CCGGCAGGGCAACCGTACAGAGTTGATGGCAGTGCCGCGGGATATTGCCAGCGACTATGAGGAGGCCATCGCCGGCACGG
TAATCGACGCAGCGTTGCTCCAGCGGGTCGAAAAAAGTGTGTCGGCTTCGCCTTTCTGGATTCGCGGCAGCTTTCTTGCC
GCAACCGCCGCGTCGCGGCTGGCGATGGGCGAAGTGGCTGAGGCCATCCGTGCGGCGACCGCTCGTTTCGTGCTGCGCAT
GCCAGCGCTGCAGCAGCTGTGCTTCAGCGACGGTCGGGTGTTTGTCGACGACCAATGCCTGGCCTGGCTCAAAGGGGCAG
ACGGGCAATCCGGGCAAGCCGGAGCTTCCCAGGAGTTCACCACCCTTCGCGAAGAACTGGTCAGCCAGCTGGAAAGCGGC
GGCGTAGAACCGGTGTTGCTAAGGCTGCAGGGGATGCAGGCAGGTTTTCGAGCCCCTCGCGAGCGCTGCCATACCACCGT
CATCGCAGCGGACCTGTTGGCCGCACGAGGCGTGTCCTGGTTAGCCCAGGACCTGTGCGCTGGGGTAGTGCGCACGATGC
AGCAAACCACCGCCAGCGACTGGGAGCCCGAGGTATTTGAGCGGCTTCAACAATACGCGTCCTCCCACCTGCTGGCCGAT
CGGAACAAGGAGCAGGAGCCTCGATGA