Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01266  |
| T6SS type | Type i1 |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon (RefSeq) | chromosome (NZ_CM001559) |
| Location | 6665915..15525 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssE | TssF | TssG | TssH |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PCHL3084_RS00015 (tagH) | 100..1293 | - | 1194 | WP_009041347.1 | type VI secretion system-associated FHA domain protein TagH | ||
| PCHL3084_RS00020 | 1311..1451 | - | 141 | WP_007930271.1 | hypothetical protein | ||
| PCHL3084_RS00025 | 1547..3064 | - | 1518 | WP_009041348.1 | sigma-54-dependent Fis family transcriptional regulator | ||
| T6CP015766 | TssH | PCHL3084_RS00030 (tssH) | 3075..5729 | - | 2655 | WP_009041349.1 | type VI secretion system ATPase TssH |
| T6CP015767 | TssG | PCHL3084_RS00035 (tssG) | 5741..6748 | - | 1008 | WP_007930277.1 | type VI secretion system baseplate subunit TssG |
| T6CP015768 | TssF | PCHL3084_RS00040 (tssF) | 6712..8499 | - | 1788 | WP_009041350.1 | type VI secretion system baseplate subunit TssF |
| PCHL3084_RS00045 | 8524..8943 | - | 420 | WP_152032060.1 | hypothetical protein | ||
| PCHL3084_RS00050 | 8964..9335 | - | 372 | WP_037004380.1 | hypothetical protein | ||
| PCHL3084_RS00055 | 9416..9841 | - | 426 | WP_037004381.1 | hypothetical protein | ||
| PCHL3084_RS29595 | 9976..10182 | - | 207 | WP_088019060.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0330 | Pchl3084_4333 (gacS) | protein | TCS-RR | Pseudomonas chlororaphis subsp. aureofaciens 30-84 | chromosome (NZ_CM001559) | 5113748..5116501 (+) | 496335944 | Pchl3084_3491 (gacA) (↓) |
| REG0331 | Pchl3084_3491 (gacA) | protein | TCS-HK | Pseudomonas chlororaphis subsp. aureofaciens 30-84 | chromosome (NZ_CM001559) | 4134794..4135435 (-) | 496335231 | Pchl3084_5419 (rsmY)promotor (↓); Pchl3084_1190 (rsmZ)promotor (↓); Pchl3084_1189 (rpoS)transcript (↓) |
Showing 1 to 2 of 2 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||