Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01266 insolico
T6SS type Type i1
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon (RefSeq) chromosome (NZ_CM001559)
Location 6665915..15525
Function -
Comment -
References
-
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentTssATssBTssCTssETssFTssGTssH
Number1111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
PCHL3084_RS00015 (tagH) 100..1293 - 1194 WP_009041347.1 type VI secretion system-associated FHA domain protein TagH
PCHL3084_RS00020 1311..1451 - 141 WP_007930271.1 hypothetical protein
PCHL3084_RS00025 1547..3064 - 1518 WP_009041348.1 sigma-54-dependent Fis family transcriptional regulator
T6CP015766 TssH PCHL3084_RS00030 (tssH) 3075..5729 - 2655 WP_009041349.1 type VI secretion system ATPase TssH
T6CP015767 TssG PCHL3084_RS00035 (tssG) 5741..6748 - 1008 WP_007930277.1 type VI secretion system baseplate subunit TssG
T6CP015768 TssF PCHL3084_RS00040 (tssF) 6712..8499 - 1788 WP_009041350.1 type VI secretion system baseplate subunit TssF
PCHL3084_RS00045 8524..8943 - 420 WP_152032060.1 hypothetical protein
PCHL3084_RS00050 8964..9335 - 372 WP_037004380.1 hypothetical protein
PCHL3084_RS00055 9416..9841 - 426 WP_037004381.1 hypothetical protein
PCHL3084_RS29595 9976..10182 - 207 WP_088019060.1 hypothetical protein
PCHL3084_RS29600 10182..10829 - 648 WP_152032105.1 hypothetical protein
PCHL3084_RS00060 10982..11494 - 513 WP_009041354.1 PAAR domain-containing protein
T6CP015769 TssE PCHL3084_RS00065 (tssE) 11505..11912 - 408 WP_007930282.1 type VI secretion system baseplate subunit TssE
T6CP015770 TssC PCHL3084_RS00070 (tssC) 11927..13402 - 1476 WP_009041355.1 type VI secretion system contractile sheath large subunit
T6CP015771 TssB PCHL3084_RS00075 (tssB) 13432..13935 - 504 WP_007930286.1 type VI secretion system contractile sheath small subunit
T6CP015772 TssA PCHL3084_RS00080 (tssA) 13969..15525 - 1557 WP_009041356.1 type VI secretion system protein TssA
PCHL3084_RS00085 16154..16429 - 276 WP_003213368.1 HU family DNA-binding protein
PCHL3084_RS00090 16618..17766 - 1149 WP_009041357.1 FAD-dependent oxidoreductase
PCHL3084_RS00095 17805..17972 - 168 WP_007930291.1 rubredoxin
PCHL3084_RS00100 18189..18752 + 564 WP_009041358.1 chorismate lyase
PCHL3084_RS00105 (ubiA) 18752..19642 + 891 WP_009041359.1 4-hydroxybenzoate octaprenyltransferase
PCHL3084_RS00110 19718..20101 - 384 WP_009041360.1 hypothetical protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0330 experimental Pchl3084_4333 (gacS) protein TCS-RR Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome (NZ_CM001559) 5113748..5116501 (+) 496335944 Pchl3084_3491 (gacA) (↓)
REG0331 experimental Pchl3084_3491 (gacA) protein TCS-HK Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome (NZ_CM001559) 4134794..4135435 (-) 496335231 Pchl3084_5419 (rsmY)promotor (↓); Pchl3084_1190 (rsmZ)promotor (↓); Pchl3084_1189 (rpoS)transcript (↓)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector