Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01266  |
| T6SS type | Type i1 |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon (RefSeq) | chromosome (NZ_CM001559) |
| Location | 6665915..15525 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssE | TssF | TssG | TssH |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| PCHL3084_RS00015 (tagH) | 100..1293 | - | 1194 | WP_009041347.1 | type VI secretion system-associated FHA domain protein TagH | ||
| PCHL3084_RS00020 | 1311..1451 | - | 141 | WP_007930271.1 | hypothetical protein | ||
| PCHL3084_RS00025 | 1547..3064 | - | 1518 | WP_009041348.1 | sigma-54-dependent Fis family transcriptional regulator | ||
| T6CP015766 | TssH | PCHL3084_RS00030 (tssH) | 3075..5729 | - | 2655 | WP_009041349.1 | type VI secretion system ATPase TssH |
| T6CP015767 | TssG | PCHL3084_RS00035 (tssG) | 5741..6748 | - | 1008 | WP_007930277.1 | type VI secretion system baseplate subunit TssG |
| T6CP015768 | TssF | PCHL3084_RS00040 (tssF) | 6712..8499 | - | 1788 | WP_009041350.1 | type VI secretion system baseplate subunit TssF |
| PCHL3084_RS00045 | 8524..8943 | - | 420 | WP_152032060.1 | hypothetical protein | ||
| PCHL3084_RS00050 | 8964..9335 | - | 372 | WP_037004380.1 | hypothetical protein | ||
| PCHL3084_RS00055 | 9416..9841 | - | 426 | WP_037004381.1 | hypothetical protein | ||
| PCHL3084_RS29595 | 9976..10182 | - | 207 | WP_088019060.1 | hypothetical protein | ||
| PCHL3084_RS29600 | 10182..10829 | - | 648 | WP_152032105.1 | hypothetical protein | ||
| PCHL3084_RS00060 | 10982..11494 | - | 513 | WP_009041354.1 | PAAR domain-containing protein | ||
| T6CP015769 | TssE | PCHL3084_RS00065 (tssE) | 11505..11912 | - | 408 | WP_007930282.1 | type VI secretion system baseplate subunit TssE |
| T6CP015770 | TssC | PCHL3084_RS00070 (tssC) | 11927..13402 | - | 1476 | WP_009041355.1 | type VI secretion system contractile sheath large subunit |
| T6CP015771 | TssB | PCHL3084_RS00075 (tssB) | 13432..13935 | - | 504 | WP_007930286.1 | type VI secretion system contractile sheath small subunit |
| T6CP015772 | TssA | PCHL3084_RS00080 (tssA) | 13969..15525 | - | 1557 | WP_009041356.1 | type VI secretion system protein TssA |
| PCHL3084_RS00085 | 16154..16429 | - | 276 | WP_003213368.1 | HU family DNA-binding protein | ||
| PCHL3084_RS00090 | 16618..17766 | - | 1149 | WP_009041357.1 | FAD-dependent oxidoreductase | ||
| PCHL3084_RS00095 | 17805..17972 | - | 168 | WP_007930291.1 | rubredoxin | ||
| PCHL3084_RS00100 | 18189..18752 | + | 564 | WP_009041358.1 | chorismate lyase | ||
| PCHL3084_RS00105 (ubiA) | 18752..19642 | + | 891 | WP_009041359.1 | 4-hydroxybenzoate octaprenyltransferase | ||
| PCHL3084_RS00110 | 19718..20101 | - | 384 | WP_009041360.1 | hypothetical protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0330 |
Pchl3084_4333 (gacS) | protein | TCS-RR | Pseudomonas chlororaphis subsp. aureofaciens 30-84 | chromosome (NZ_CM001559) | 5113748..5116501 (+) | 496335944 | Pchl3084_3491 (gacA) (↓) |
| REG0331 |
Pchl3084_3491 (gacA) | protein | TCS-HK | Pseudomonas chlororaphis subsp. aureofaciens 30-84 | chromosome (NZ_CM001559) | 4134794..4135435 (-) | 496335231 | Pchl3084_5419 (rsmY)promotor (↓); Pchl3084_1190 (rsmZ)promotor (↓); Pchl3084_1189 (rpoS)transcript (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|