Detailed information of component protein


Summary

Component ID T6CP015769
Component protein type TssE
T6SS ID (Type) T6SS01266 insolico (Type i1)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (136 a.a.); Nucleotide sequence (408 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS00065
Coordinate (Strand) 11505..11912 (-)
NCBI ID WP_007930282.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 2.6e-16 26..113
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 136 a.a.    

>T6CP015769 NZ_CM001559:c11912-11505 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssE]
MTGYGSLFERLSGEADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQTLSDYGLPDLNDMRLSLHDALSQARLAIESFIE
AYEPRLSNVRVVSLPRDHDQLKLAFNIEGLLEVDGFKRQVSFSARLDGSGQVKVS*

  Nucleotide sequence: 408 bp    

>T6CP015769 NZ_CM001559:c11912-11505 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssE]
ATGACCGGATACGGCAGCCTTTTCGAACGCCTGAGTGGCGAGGCCGACAAACGTGTCGGCTGGAGCCGCGAGGTTTCCGC
CATGGCGTCGGTGGCTGCCCATCTGGGCAAGATGCTCAGCACCCGTGCGGGCAGCGTGCAGACGCTGTCCGATTACGGGT
TGCCCGATCTCAACGACATGCGCCTGAGCCTGCACGACGCGCTGAGCCAGGCCCGCCTGGCCATCGAAAGCTTCATCGAA
GCCTACGAACCGCGTCTGAGCAACGTGCGTGTCGTTTCCCTGCCGCGTGATCACGACCAGCTCAAGCTGGCTTTCAATAT
CGAAGGCCTGCTTGAGGTGGACGGGTTCAAGCGCCAGGTCAGTTTTTCCGCGCGCCTGGATGGCAGCGGCCAGGTCAAGG
TCAGTTAA