Detailed information of component protein


Summary

Component ID T6CP015768
Component protein type TssF
T6SS ID (Type) T6SS01266 insolico (Type i1)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (596 a.a.); Nucleotide sequence (1788 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS00040
Coordinate (Strand) 6712..8499 (-)
NCBI ID WP_009041350.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 8.5e-144 3..591
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 596 a.a.    

>T6CP015768 NZ_CM001559:c8499-6712 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssF]
VSFNHYYQSELTALRQLGRRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELSHSLMHLLWPNYMR
PLPAFSILQFDPLKQSGPALRVERDTPVESKPIDDVRCRFRTCYPTEVLPLDLTALNYSVKGDGALLSLRLEMSCDGHLG
ELNLSRLRLHLAGERYISQMLYLSLLRNLEGIELVPLGMDGKPFPGVSGNAMSFKMPGNRVQPVGFAEEEALIPYPLNTF
RGYRYLQEYFAFQDKFLFVDLNGLDLLKSLPEDTLKQLHGLEVRFDIRKSGIQRLRPTLDNVKLYCTPIANLFKHDALPI
RLDGKQDEYLLLPAEYDLENCGVFSVETVTGWKPGGLGYQEYVPFESFEHDPSFDVPNSRPHYSIRQRSSLLHDGLDTYL
SFGIRHTEAHETLSIELMCTNQNLPRKLKLGDICMACEETPEFLSFRNITPATSSYAPPLNRDFLWKLISNMSLNYLSLA
NVDALKVILETYDLPRYYDQHLEKVSKRLLGGLKSIRHEHVDRLHRGLPLRGLRTELTIDPEGYIGEGDMFVFASVLNEF
FALYASLNSYHELRVKSTQGEVYQWTPRMGLQPLL*

  Nucleotide sequence: 1788 bp    

>T6CP015768 NZ_CM001559:c8499-6712 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssF]
GTGTCCTTTAACCACTACTACCAAAGCGAACTCACCGCGCTGCGTCAGCTGGGTCGCCGTTTCGCCGAGCGTAGTCCGGC
CCTGGCGCCGTTCCTGGGCCAGGCCGGGCGGGATCCGGATGTGGAGCGCCTGCTCGAAGGTTTCGCCTTTCTCACCGGTC
GCCTGCGGCAGAAGCTCGATGACGAGCTGCCGGAGCTCAGCCACTCGCTGATGCACCTGCTGTGGCCGAACTACATGCGG
CCGTTGCCGGCGTTCAGCATTCTGCAGTTCGACCCGCTGAAGCAGTCCGGGCCGGCCCTGCGCGTGGAGCGTGATACGCC
GGTGGAGAGCAAGCCCATCGATGATGTGCGTTGTCGCTTCCGCACTTGCTACCCGACCGAAGTCCTGCCGCTGGACCTGA
CGGCGCTGAATTACTCGGTGAAAGGCGACGGCGCGCTGCTCAGCCTGCGCCTGGAGATGAGCTGCGACGGCCACCTCGGC
GAGCTGAACCTCAGCCGCCTGCGCCTGCACCTGGCGGGCGAGCGCTACATCAGCCAGATGCTCTACCTGAGCCTGCTGCG
CAACCTCGAAGGCATCGAACTGGTGCCGCTGGGCATGGACGGCAAGCCGTTCCCGGGTGTCAGCGGCAATGCCATGTCGT
TCAAGATGCCCGGCAACCGCGTGCAGCCGGTGGGCTTTGCCGAGGAAGAGGCGTTGATCCCGTATCCGCTGAACACCTTC
CGCGGCTATCGCTACCTGCAGGAGTATTTCGCCTTCCAGGACAAGTTCCTGTTCGTCGACCTGAACGGCCTGGACCTGCT
CAAATCGCTGCCGGAGGACACCCTCAAGCAGCTGCACGGCCTGGAAGTGCGCTTCGACATTCGCAAGAGCGGCATCCAGC
GCCTGCGGCCGACCCTGGACAACGTGAAGCTGTACTGCACGCCGATCGCCAACCTGTTCAAGCACGACGCCCTGCCGATC
CGCCTCGACGGCAAGCAGGACGAGTACCTGCTGCTGCCGGCCGAATACGACCTGGAAAACTGCGGCGTGTTCTCGGTGGA
AACCGTGACCGGCTGGAAGCCCGGCGGCCTGGGTTACCAGGAATATGTACCGTTCGAATCCTTCGAGCACGACCCAAGTT
TCGACGTGCCCAACAGCCGTCCGCATTACAGCATCCGCCAGCGTTCGTCCTTGCTGCACGACGGCCTCGACACCTACCTG
AGCTTCGGCATCCGCCACACCGAAGCCCACGAAACCCTGTCGATCGAGCTGATGTGCACCAATCAGAACCTGCCGCGCAA
GCTCAAGCTCGGCGATATCTGCATGGCCTGTGAAGAGACGCCGGAGTTTTTGAGTTTCCGCAATATCACCCCGGCCACCT
CGAGCTACGCGCCACCGCTGAATCGCGACTTCCTGTGGAAGCTGATCAGCAACATGTCGCTCAACTATCTGTCACTGGCC
AACGTCGATGCGCTCAAGGTGATTCTCGAAACCTACGACTTGCCGCGTTACTACGACCAGCACCTGGAAAAGGTCAGCAA
GCGCCTGCTGGGCGGGCTCAAGTCGATCCGCCATGAGCATGTCGACCGGCTGCATCGGGGCCTGCCGCTGCGCGGTCTGC
GCACCGAGCTGACTATCGATCCGGAAGGCTATATCGGTGAAGGCGACATGTTCGTCTTCGCCTCGGTTCTCAACGAGTTT
TTCGCTCTTTACGCCAGTCTCAACTCGTACCACGAGCTGCGGGTAAAAAGTACACAGGGAGAGGTGTACCAATGGACACC
ACGTATGGGTCTACAGCCCCTGCTTTAA