Detailed information of component protein


Summary

Component ID T6CP015772
Component protein type TssA
T6SS ID (Type) T6SS01266 insolico (Type i1)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (519 a.a.); Nucleotide sequence (1557 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS00080
Coordinate (Strand) 13969..15525 (-)
NCBI ID WP_009041356.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2.8e-80 226..483
ImpA_N PF06812.14 9.8e-31 18..127
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 519 a.a.    

>T6CP015772 NZ_CM001559:c15525-13969 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssA]
MSYSSKLSAHYLELAKASVSKESFAGEDVRFSSEYEALESELGKAQSMHESGQIDWLKILENSEALLRTQSKDLRVAAWL
TWALYQRESFPGLLAGLGLLQHLCEQHWAQIHPAKLRTRAAAIGWLVPRLEQVLGENIAIKEQLPLFRRLVEHLEGLDAA
LTEHLGDNAPLLLPICRRLSTMVQRAADNQPEPGAVGAVVAQVKQAATQLFTPGAPIDNEKEAQKALRAMQENARPLSAW
WLKQKATDVRALRLNRTMLWLPIDAVPERNAEQITALRGLPADKLKTYQERFANGQYADLLVELEASLARAPFWFDGQRM
VWECLQGLNADQAMREVEFHFALLLQRLPGVVELRFHDGAPFADPATRGWISAHVMPHLQSASAPRKVEATASQPAWEEA
LEEVLPILRKDGLKAAVQILKQGLQNAHGGRVRFFWQFSLARLCFMAKKYELAKTQLETLDQELLSSGLHAWEPDLALEV
LHLLHSCCELLPQNHAVRERKEEIYRRLCHLDLEVVLE*

  Nucleotide sequence: 1557 bp    

>T6CP015772 NZ_CM001559:c15525-13969 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssA]
ATGTCCTACTCAAGTAAACTTTCTGCCCATTACCTCGAACTCGCCAAAGCCTCTGTTTCCAAAGAGAGTTTTGCGGGCGA
GGACGTTCGCTTCTCCAGCGAATACGAGGCACTGGAAAGTGAGCTGGGCAAAGCCCAATCCATGCACGAAAGCGGTCAGA
TCGACTGGCTGAAAATCCTCGAAAACAGTGAAGCGCTGCTGCGTACCCAGTCCAAGGATCTGCGGGTGGCCGCCTGGCTC
ACCTGGGCCTTGTATCAGCGTGAATCCTTCCCCGGCCTGCTGGCCGGCCTTGGTCTTCTGCAGCACCTGTGCGAGCAGCA
TTGGGCGCAGATTCACCCCGCCAAACTGCGCACCCGGGCTGCCGCCATCGGCTGGCTGGTGCCGCGTCTCGAGCAGGTGC
TGGGCGAAAACATCGCGATCAAGGAGCAACTGCCGCTGTTCCGCCGCCTGGTGGAACACCTGGAAGGACTCGACGCCGCG
CTCACCGAGCATCTGGGTGACAACGCGCCCTTGCTGCTGCCGATCTGTCGGCGGCTGTCGACCATGGTCCAGCGCGCCGC
CGACAACCAGCCGGAACCTGGCGCCGTGGGCGCGGTGGTGGCCCAGGTCAAGCAGGCCGCGACCCAGCTGTTCACGCCTG
GCGCGCCGATCGACAACGAGAAGGAAGCGCAGAAGGCCCTGCGTGCGATGCAGGAAAACGCCCGTCCACTGAGCGCCTGG
TGGCTCAAGCAGAAGGCCACTGACGTACGCGCCCTGCGCCTGAACCGCACCATGCTGTGGTTGCCCATCGATGCCGTCCC
GGAGCGCAACGCCGAGCAGATCACTGCGTTGCGCGGGCTGCCGGCGGACAAGCTCAAGACCTACCAGGAGCGTTTTGCCA
ATGGGCAATACGCCGACCTGTTGGTGGAGCTCGAAGCCAGCCTGGCCAGGGCGCCGTTCTGGTTCGACGGCCAGCGCATG
GTCTGGGAATGCCTGCAGGGGCTGAACGCCGACCAGGCGATGCGCGAAGTGGAGTTTCACTTCGCACTCCTGTTGCAGCG
CCTGCCGGGCGTGGTCGAGTTGCGTTTCCACGACGGCGCGCCTTTCGCCGACCCGGCCACCCGCGGCTGGATCAGCGCCC
ACGTCATGCCCCATCTGCAAAGCGCCAGCGCGCCGCGCAAGGTCGAAGCGACCGCCAGCCAGCCGGCCTGGGAAGAAGCC
CTCGAAGAGGTCTTGCCGATCCTGCGCAAGGACGGCCTCAAGGCCGCCGTGCAGATCCTCAAGCAAGGCCTGCAGAACGC
CCATGGCGGGCGGGTGCGGTTTTTCTGGCAGTTCAGCCTGGCGCGGCTGTGCTTCATGGCCAAGAAATACGAGCTGGCCA
AGACCCAGCTCGAAACCCTCGATCAAGAATTACTGAGCTCGGGCCTGCATGCCTGGGAGCCGGATCTTGCGTTGGAAGTG
CTGCACCTCCTGCATAGCTGCTGTGAGTTGTTGCCGCAGAACCACGCAGTGCGAGAACGCAAGGAAGAGATTTATCGCAG
GCTGTGCCACCTCGACCTCGAAGTGGTACTCGAATAG