Detailed information of component protein
Summary
| Component ID | T6CP015771 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01266  (Type i1) |
| Strain | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PCHL3084_RS00075 |
| Coordinate (Strand) | 13432..13935 (-) |
| NCBI ID | WP_007930286.1 |
| RefSeq | NZ_CM001559 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 7.9e-53 | 6..158 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 168 a.a.
>T6CP015771 NZ_CM001559:c13935-13432 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssB]
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTQRVDERKVEDRKPISIDKMTFDEVLAKQELSLTLSVPNR
LQEEGDTEELAVKLRVNSMKDFNPASLVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIEGVLADDESRGRVLGELGL
NAAATEA*
MAKEGSVAPKERINVTFKPATGGAQEEIELPLKLLAIGDYTQRVDERKVEDRKPISIDKMTFDEVLAKQELSLTLSVPNR
LQEEGDTEELAVKLRVNSMKDFNPASLVEQVPELKKLMELRDALVALKGPLGNAPAFRKAIEGVLADDESRGRVLGELGL
NAAATEA*
Nucleotide sequence: 504 bp
>T6CP015771 NZ_CM001559:c13935-13432 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssB]
ATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGGTGCTCAGGAAGA
GATTGAACTGCCGTTGAAGCTACTGGCAATCGGTGATTACACCCAGCGCGTGGACGAGCGCAAAGTGGAAGACCGCAAGC
CGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGCCAAGCAGGAGCTGAGCCTGACGCTGAGCGTGCCTAACCGT
CTTCAGGAAGAGGGCGACACCGAAGAGCTGGCGGTCAAGCTGCGCGTCAACTCGATGAAGGACTTCAACCCGGCCAGCCT
GGTCGAGCAAGTGCCTGAGCTGAAAAAACTGATGGAACTGCGCGACGCGCTGGTGGCCCTCAAGGGTCCGCTGGGTAACG
CCCCTGCATTCCGTAAAGCCATCGAAGGCGTACTCGCCGACGACGAATCGCGCGGTCGTGTACTCGGTGAGCTGGGCCTG
AACGCCGCAGCCACCGAAGCCTGA
ATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGGTGCTCAGGAAGA
GATTGAACTGCCGTTGAAGCTACTGGCAATCGGTGATTACACCCAGCGCGTGGACGAGCGCAAAGTGGAAGACCGCAAGC
CGATCAGCATCGACAAAATGACGTTCGACGAAGTGCTGGCCAAGCAGGAGCTGAGCCTGACGCTGAGCGTGCCTAACCGT
CTTCAGGAAGAGGGCGACACCGAAGAGCTGGCGGTCAAGCTGCGCGTCAACTCGATGAAGGACTTCAACCCGGCCAGCCT
GGTCGAGCAAGTGCCTGAGCTGAAAAAACTGATGGAACTGCGCGACGCGCTGGTGGCCCTCAAGGGTCCGCTGGGTAACG
CCCCTGCATTCCGTAAAGCCATCGAAGGCGTACTCGCCGACGACGAATCGCGCGGTCGTGTACTCGGTGAGCTGGGCCTG
AACGCCGCAGCCACCGAAGCCTGA