Detailed information of component protein


Summary

Component ID T6CP015766
Component protein type TssH
T6SS ID (Type) T6SS01266 insolico (Type i1)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (885 a.a.); Nucleotide sequence (2655 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS00030
Coordinate (Strand) 3075..5729 (-)
NCBI ID WP_009041349.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.1e-42 618..783
AAA_lid_9 PF17871.3 2.6e-28 348..440
AAA PF00004.31 4.7e-10 208..339
ClpB_D2-small PF10431.11 1.3e-08 794..861
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 885 a.a.    

>T6CP015766 NZ_CM001559:c5729-3075 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssH]
MINVDLQQLIQALDAETRRDLESSAERCVARGGSKILVEDLLLGLLERPQGLLARALQDAEVDAGELSAALQSRVEHSAS
RNPVFAPELVQWLQDALLVANLELGQSQVEQAALILALLRNPMRYAGSRYQPLLAKLNIERLKDFALSQKEEPASGKPAA
PGESLLQRFTHNLTQQAREGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAVVEGLASRIAAGEVPQVLKGV
ELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAATT
WAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVAAAELSARYLAGRQLPDKAVDVLD
TACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLAIDEEALDALEARLAEAEAEQQALETLWSEQRTLAERL
LELRQQLAKAREAAAVEPTVSVEEDAEGTVIETLAAEVEEGQSVEALEAALNETHRALSDAQSQERLVSFEVCPRLVAEV
ISAWTGVPLTQLAREHNAKVASFATDLRARIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALA
DLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVILLDEVEKADPDVLNLFYQIFDKGVA
NDGEGREIDFRNTLILMTSNLASDRISALCENGERPSAETLEETIRPVLSKHFKPALLARMRVVPYYPVGGPVLRELIEI
KLGRLGERLNRRQLDFTHCQNLVDHLAERCTQSESGARLIDHLLDLHVLPLVADRLLDAMATGENLKRVHATLDSSGGVT
CEFA*

  Nucleotide sequence: 2655 bp    

>T6CP015766 NZ_CM001559:c5729-3075 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssH]
ATGATCAACGTAGACCTGCAGCAACTGATCCAGGCGCTGGACGCCGAAACCCGCCGTGACCTGGAAAGCTCCGCCGAACG
CTGCGTCGCCCGTGGCGGCAGCAAGATCCTGGTCGAAGACCTGCTGCTGGGCTTGCTGGAGCGTCCGCAAGGCTTGCTCG
CACGCGCGTTGCAGGACGCCGAAGTGGATGCCGGCGAGCTGAGCGCGGCGCTGCAATCGCGGGTCGAGCACAGTGCCTCG
CGCAACCCGGTGTTCGCCCCGGAGCTGGTGCAGTGGCTGCAGGACGCCTTGCTGGTGGCCAACCTCGAACTGGGCCAGAG
CCAGGTCGAGCAGGCGGCGCTGATCCTCGCGCTGCTGCGCAACCCGATGCGTTACGCCGGTAGCCGCTACCAGCCATTGC
TGGCCAAGTTGAACATCGAGCGCCTGAAAGATTTCGCCCTGTCGCAGAAGGAAGAGCCGGCCAGCGGCAAGCCGGCGGCG
CCGGGCGAATCGCTGTTGCAGCGCTTCACCCACAACCTGACCCAGCAGGCGCGCGAGGGCAAGCTCGACCCGGTGCTGTG
CCGCGATGGCGCGATCCGCCAGATGGTCGACATCCTCGCCCGTCGCCGCAAGAACAACCCGATCGTGGTCGGCGAAGCCG
GTGTCGGCAAGACCGCGGTGGTCGAAGGCCTGGCCTCGCGCATCGCCGCCGGTGAAGTGCCGCAAGTGCTCAAGGGCGTC
GAGCTGCTGTCGCTGGACATGGGCCTGCTGCAAGCGGGCGCCAGTGTGAAGGGCGAGTTCGAGCGCCGCCTCAAGGGCGT
GATCGACGAGGTCAAGGCTTCGCCTAAGCCGATCATTCTGTTTATCGACGAAGCCCACACCCTGATCGGCGCCGGTGGCA
ACGCCGGCGGTTCCGACGCGGCCAACCTGCTCAAGCCAGCCCTGGCCCGTGGCGAGCTGCGCACCATCGCCGCCACCACC
TGGGCCGAGTACAAGAAGTACTTCGAGAAAGACCCGGCCCTGGCCCGTCGCTTCCAGCCGGTGCAGTTGCACGAGCCGAC
CGTCAGCGAGGCGGTGACCATCCTGCGTGGCCTGGCCCAGGTCTACGAGAAGAGCCACGGTATCTACCTGCGCGACGACG
CAGTGGTGGCCGCGGCCGAACTGTCGGCCCGCTACCTGGCCGGCCGCCAGCTGCCGGACAAGGCGGTGGACGTACTCGAC
ACCGCCTGTGCCCGGGTGCGCATCAGCCTGGCGGCGGCGCCGGAGAGCCTGGAGCGCCTGCGTGGCGAGCTGGCCGAAGG
CGGCCGTCAGCGTCAGGCGCTGCGCCGCGACGCCGAAGCCGGCCTGGCGATCGACGAGGAAGCCCTGGACGCGCTGGAGG
CCCGCCTGGCCGAAGCCGAGGCCGAGCAACAAGCCCTGGAAACCCTGTGGAGCGAACAGCGCACCCTGGCCGAGCGCCTG
CTCGAACTGCGCCAGCAACTGGCCAAGGCCCGCGAGGCCGCGGCGGTCGAGCCGACCGTCAGCGTTGAAGAAGATGCCGA
AGGCACGGTGATCGAGACCCTCGCCGCCGAAGTGGAAGAGGGGCAGAGCGTCGAGGCACTGGAAGCCGCCCTCAACGAAA
CCCATCGCGCCCTGAGCGATGCCCAGAGCCAGGAGCGCCTGGTCAGCTTCGAAGTCTGCCCGCGCCTGGTGGCCGAGGTG
ATCAGTGCCTGGACCGGCGTGCCGCTGACGCAACTGGCCCGCGAGCACAACGCCAAGGTCGCGAGTTTCGCCACCGACCT
GCGCGCGCGCATTCGTGGTCAGGAGCAGGCGGTGCACGCCCTGGATCGTTCGATGCGCGCCACCGCCGCTGGCCTGAACA
AGCCGGACGCGCCGGTGGGCGTGTTCCTGCTGGTGGGCCCGAGCGGCGTCGGCAAGACCGAAACCGCCCTGGCCCTGGCC
GACCTGCTGTACGGCGGCGACCGCTTTATCACCACCATCAACATGTCCGAGTTCCAGGAGAAGCACACCGTGTCGCGCCT
GATCGGCGCGCCTCCAGGCTACGTCGGCTACGGCGAAGGCGGCATGCTCACCGAGGCGGTGCGGCAGAAACCCTATTCGG
TGATTCTGCTCGACGAGGTCGAGAAAGCCGACCCGGACGTGCTCAACCTGTTCTATCAGATCTTCGATAAAGGCGTGGCC
AACGACGGCGAAGGGCGCGAGATCGATTTTCGCAACACCCTGATCCTGATGACCTCGAACCTGGCCAGCGACCGCATCAG
TGCGCTGTGCGAGAACGGCGAGCGGCCGAGCGCCGAGACCCTGGAAGAGACCATCCGCCCGGTGCTCAGCAAGCACTTCA
AGCCGGCGCTGCTGGCGCGCATGCGTGTGGTGCCGTACTACCCGGTGGGCGGCCCGGTGCTGCGCGAACTGATCGAAATC
AAGCTGGGCCGTTTAGGTGAACGCCTGAACCGTCGCCAGCTGGATTTCACTCACTGCCAGAACCTGGTCGACCATCTGGC
CGAGCGCTGCACCCAGAGCGAAAGCGGCGCGCGCCTGATCGATCATTTGCTCGACCTGCACGTACTGCCGCTGGTGGCCG
ACCGCCTGCTGGACGCCATGGCCACCGGCGAGAACCTCAAGCGCGTGCACGCGACGCTCGACAGCAGCGGCGGCGTGACC
TGCGAGTTCGCCTGA