Detailed information of component protein


Summary

Component ID T6CP015770
Component protein type TssC
T6SS ID (Type) T6SS01266 insolico (Type i1)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS00070
Coordinate (Strand) 11927..13402 (-)
NCBI ID WP_009041355.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.1e-130 65..364
VipB_2 PF18945.2 2.7e-44 378..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 492 a.a.    

>T6CP015770 NZ_CM001559:c13402-11927 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssC]
MSTSAAQQKSNENGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMD
EILHHEDFQSLESAWRGLQLLVDRTNFRENIKIEILNVSKQDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIA
NYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDSRYIGLTVP
RFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGPQSGGAVEDLPLHHFESMGEI
ETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY
LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQIIVSDVEGEPGWYRVSLNVRPHFKYMGADF
TLSLVGKLDKE*

  Nucleotide sequence: 1476 bp    

>T6CP015770 NZ_CM001559:c13402-11927 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssC]
ATGAGCACTAGTGCAGCACAACAGAAAAGCAACGAGAACGGCGAGTACAGCATTCTCGACAGCATCATCGCCGAAACCCG
CCTGACTCCGGACGACGAAGCCTACGACATCGCCAAGCGCGGCGTGTCGGCCTTCATCGAAGAGCTGCTCAAGCCTCAGA
ACAATGGCGAGCCAGTCAAGAAGGCCATGGTTGACCGCATGATCGCCGAGATCGATGCCAAGCTCAGCCGCCAGATGGAC
GAAATCCTCCACCACGAAGACTTCCAGTCCCTGGAATCGGCCTGGCGTGGCCTGCAGTTGCTGGTCGACCGCACCAACTT
CCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCCAAGCAGGACCTGCTGGACGACTTCGAAGATTCGCCGGAAGTGA
TGCAGTCTGGCCTGTACAAGCACATCTACACCGCTGAATACGGCCAGTTCGGTGGCCAGCCGGTGGGCGCGATCATCGCC
AACTACTTCATGTCGCCAAGCTCGCCAGACGTGAAGCTGATGCAGTACGTGTCCAGCGTTGCCTGCATGTCCCACGCGCC
GTTCATCGCCGCGGCCGGTCCGAAATTCTTCGGCCTGGAAAGTTTCACCGGCCTGCCGGACCTGAAGGATCTGAAGGATC
ACTTCGAAGGCCCGCAATTCGCCAAATGGCAGAGCTTCCGCCAGTCGGAAGACTCGCGCTACATCGGCCTGACCGTACCG
CGCTTCCTGCTGCGCAACCCGTACGATCCGGAAGAGAACCCGGTCAAATCCTTCGTCTACAAGGAAACCGTTGCCAACAG
CCACGAGCACTACCTGTGGGGCAACACCGCGTATGCGTTCGGTACCAAGCTGACCGACAGCTTCGCCAAGTTCCGCTGGT
GCCCGAACATCATCGGCCCGCAGAGCGGTGGTGCGGTAGAAGACCTGCCGTTGCACCACTTCGAAAGCATGGGCGAGATC
GAAACCAAGATCCCGACCGAGGTACTGGTCAGCGACCGTCGTGAATACGAACTGGCCGAGGAAGGTTTCATCTCCCTGAC
CATGCGCAAAGGCAGCGACAACGCGGCGTTCTTCTCCGCCAGCTCGGTGCAGAAGCCGAAGTTCTTCGGCATCAGCGCCG
AAGGCAAGGCCGCGGAGCTGAACTACAAGCTCGGCACCCAGCTGCCGTACATGATGATCGTCAACCGCCTGGCTCACTAC
CTCAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAGCGTACCGACCTCGAGCTGGAACTCAACAAGTGGATCCG
TCAGTACGTCGCCGACCAGGAAAACCCGAGCGCCGAAGTCCGTGGCCGTCGTCCGCTGCGCGCCGCGCAGATCATCGTCA
GCGATGTGGAAGGTGAGCCGGGCTGGTACCGCGTCAGCCTGAACGTGCGCCCGCACTTCAAGTACATGGGTGCCGATTTC
ACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA