Detailed information of component protein


Summary

Component ID T6CP015767
Component protein type TssG
T6SS ID (Type) T6SS01266 insolico (Type i1)
Strain Pseudomonas chlororaphis subsp. aureofaciens 30-84
Replicon chromosome
Sequence Protein sequence (336 a.a.); Nucleotide sequence (1008 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PCHL3084_RS00035
Coordinate (Strand) 5741..6748 (-)
NCBI ID WP_007930277.1
RefSeq NZ_CM001559
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1e-87 20..320
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 336 a.a.    

>T6CP015767 NZ_CM001559:c6748-5741 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssG]
MDTTYGSTAPALSGLTRVIREYSLFQAVLLVVDRLRDSHPGLSEEDLYDQLEFQANPSLGFPGSDVDRVEFFEEHGQMRA
RLRFNLIGLFGSGSPLPAFYGEQALGDSEDGNPTRNFLDLFHHRLQRLMLPIWRKYRYRASFKSGALDPFSAQLFALIGL
GGEDIRKAKELNWKRLLPYLGLLSLRAHSAALIEAVLRYYFKHADLVIEQCIERRVEILEEQRNRLGRANSQLGEDLVLG
ERVRDRSGKFRIHIRQLDWQRFHEFLPIGFGYQPLCALVRFTLRDPLDYDIRLVLRQEEIRELRIGEQNACRLGWTSWLG
RERADGVVTLGSKIH*

  Nucleotide sequence: 1008 bp    

>T6CP015767 NZ_CM001559:c6748-5741 [Pseudomonas chlororaphis subsp. aureofaciens 30-84] [TssG]
ATGGACACCACGTATGGGTCTACAGCCCCTGCTTTAAGCGGGCTGACCCGGGTCATTCGCGAGTACTCGCTGTTTCAGGC
CGTGCTGCTGGTGGTGGACCGGCTGCGCGATTCCCATCCGGGCCTGAGCGAAGAGGATCTCTACGACCAGCTGGAATTCC
AGGCCAATCCGAGCCTGGGGTTCCCTGGCAGCGATGTCGATCGCGTGGAGTTTTTCGAAGAGCACGGGCAAATGCGCGCG
CGCCTGCGGTTCAACCTGATCGGGCTGTTCGGCTCCGGCTCGCCGCTGCCGGCGTTCTACGGTGAACAAGCCCTGGGCGA
CAGCGAAGACGGCAACCCGACCCGCAACTTCCTCGACCTGTTCCACCATCGCCTGCAACGGCTGATGCTGCCGATCTGGC
GCAAGTACCGTTACCGCGCCAGCTTCAAGAGCGGCGCGCTCGACCCGTTTTCCGCCCAGCTGTTCGCCCTGATCGGCCTC
GGCGGCGAGGACATCCGCAAGGCCAAGGAGCTGAACTGGAAGCGCCTGCTACCGTACCTCGGCCTGCTCAGCCTGCGGGC
CCACTCGGCGGCATTGATCGAGGCCGTGCTGCGTTACTACTTCAAGCATGCGGACCTGGTGATCGAGCAGTGCATCGAGC
GTCGGGTGGAAATTCTCGAAGAGCAGCGCAACCGCCTGGGCCGCGCCAACAGCCAGCTCGGCGAGGACCTGGTGCTGGGC
GAACGGGTGCGCGATCGCAGTGGCAAGTTCCGCATCCATATCCGCCAGCTCGACTGGCAACGCTTCCACGAATTCCTGCC
GATCGGTTTCGGCTACCAGCCGCTGTGCGCGCTGGTGCGGTTCACCTTGCGTGACCCGCTGGACTACGACATTCGCCTGG
TCCTGCGCCAGGAAGAAATCCGCGAACTGCGCATCGGTGAGCAGAACGCCTGTCGCCTGGGGTGGACCAGTTGGCTCGGC
CGCGAACGCGCGGACGGCGTGGTGACCCTGGGCAGCAAAATTCATTAA