Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00549 insolico
T6SS type Type Unknown
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon (RefSeq) chromosome (NC_016845)
Location 3235063..3263672
Function -
Comment -
References
-
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentPAARTagLTssATssETssFTssGTssITssJTssKTssLTssM
Number11111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
KPHS_32400 3231179..3231454 - 276 YP_005227540.1 stress-induced protein YchH
KPHS_32410 3231727..3232311 + 585 YP_005227541.1 peptidyl-tRNA hydrolase
KPHS_32420 3232429..3233520 + 1092 YP_005227542.1 translation-associated GTPase
KPHS_32430 3233604..3233933 - 330 YP_005227543.1 DUF1869 domain-containing protein
KPHS_32440 3234017..3234931 - 915 YP_005227544.1 putative periplasmic sugar-binding protein
T6CP008983 TssA KPHS_32450 3235063..3236478 - 1416 YP_005227545.1 type VI secretion system ImpA family N-terminal domain-containing protein
T6CP008984 TssE KPHS_32460 3236498..3236941 - 444 YP_005227546.1 type VI secretion system lysozyme-like protein
T6CP005807 TssJ KPHS_32470 3236944..3237432 - 489 YP_005227547.1 type VI secretion system lipoprotein TssJ
T6CP005808 TssG KPHS_32480 3237461..3238477 - 1017 YP_005227548.1 type VI secretion system baseplate subunit TssG
T6CP005809 TssF KPHS_32490 3238507..3240270 - 1764 YP_005227549.1 type VI secretion system baseplate subunit TssF
T6CP005810 TssM KPHS_32500 3240404..3243814 - 3411 YP_005227550.1 type VI secretion protein VasK
KPHS_32510 3243798..3244955 - 1158 YP_005227551.1 hypothetical protein
T6CP011988 PAAR KPHS_32520 3244959..3245225 - 267 YP_005227552.1 PAAR domain-containing protein
KPHS_32530 3245523..3245765 - 243 YP_005227553.1 hypothetical protein
KPHS_32540 3245834..3245947 - 114 YP_005227554.1 hypothetical protein
KPHS_32550 3245967..3246101 - 135 YP_005227555.1 hypothetical protein
KPHS_32560 3246085..3246312 - 228 YP_005227556.1 hypothetical protein
KPHS_32570 3246446..3247018 - 573 YP_005227557.1 sulfatase modifying factor 1
KPHS_32580 3246982..3247335 - 354 YP_005227558.1 sulfatase modifying factor 1
KPHS_32600 3247511..3247768 - 258 YP_005227559.1 hypothetical protein
KPHS_32590 3247846..3247968 - 123 YP_005227560.1 hypothetical protein
KPHS_32610 3248047..3249015 + 969 YP_005227561.1 transposase InsC for insertion sequence IS903
KPHS_32620 3249137..3249349 - 213 YP_005227562.1 SUMF1/EgtB/PvdO family nonheme iron enzyme
KPHS_32630 3249645..3250538 - 894 YP_005227563.1 sulfatase modifying factor 1
KPHS_32640 3250560..3250676 - 117 YP_005227564.1 hypothetical protein
KPHS_32650 3250722..3251615 - 894 YP_005227565.1 sulfatase modifying factor 1 -like protein
KPHS_32660 3251637..3251948 - 312 YP_005227566.1 hypothetical protein
KPHS_32670 3251966..3252994 - 1029 YP_005227567.1 hypothetical protein
KPHS_32680 3253359..3253886 - 528 YP_005227568.1 hypothetical protein
KPHS_32690 3253952..3254476 - 525 YP_005227569.1 hypothetical protein
KPHS_32700 3254553..3255149 - 597 YP_005227570.1 hypothetical protein
KPHS_32710 3255146..3255655 - 510 YP_005227571.1 hypothetical protein
KPHS_32720 3255656..3257011 - 1356 YP_005227572.1 S-type pyocin domain-containing protein
T6CP005811 TssI KPHS_32730 3257035..3259521 - 2487 YP_005227573.1 type VI secretion system tip protein VgrG
KPHS_32740 3259672..3259797 - 126 YP_005227574.1 hypothetical protein
T6CP011989 TagL KPHS_32750 3259981..3261678 - 1698 YP_005227575.1 OmpA family protein
T6CP008985 TssL KPHS_32760 3261682..3262335 - 654 YP_005227576.1 membrane protein
T6CP005812 TssK KPHS_32770 3262332..3263672 - 1341 YP_005227577.1 type VI secretion system baseplate subunit TssK
KPHS_32780 3263910..3264071 - 162 YP_005227578.1 hypothetical protein
KPHS_32790 3264242..3264571 + 330 YP_005227579.1 gamma-glutamylcyclotransferase
KPHS_32800 3264686..3265225 + 540 YP_005227580.1 putative nucleoprotein/polynucleotide-associated enzyme
KPHS_32810 3265251..3266042 - 792 YP_005227581.1 putative ribosomal large subunit pseudouridine synthase A
KPHS_32820 3266140..3266622 + 483 YP_005227582.1 cold shock protein E
KPHS_32830 3266732..3267631 + 900 YP_005227583.1 LysR family transcriptional regulator
KPHS_32840 3267606..3268415 - 810 YP_005227584.1 molybdate ABC transporter periplasmic substrate-binding protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector