Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00549  |
| T6SS type | Type Unknown |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon (RefSeq) | chromosome (NC_016845) |
| Location | 3235063..3263672 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssE | TssF | TssG | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| KPHS_32400 | 3231179..3231454 | - | 276 | YP_005227540.1 | stress-induced protein YchH | ||
| KPHS_32410 | 3231727..3232311 | + | 585 | YP_005227541.1 | peptidyl-tRNA hydrolase | ||
| KPHS_32420 | 3232429..3233520 | + | 1092 | YP_005227542.1 | translation-associated GTPase | ||
| KPHS_32430 | 3233604..3233933 | - | 330 | YP_005227543.1 | DUF1869 domain-containing protein | ||
| KPHS_32440 | 3234017..3234931 | - | 915 | YP_005227544.1 | putative periplasmic sugar-binding protein | ||
| T6CP008983 | TssA | KPHS_32450 | 3235063..3236478 | - | 1416 | YP_005227545.1 | type VI secretion system ImpA family N-terminal domain-containing protein |
| T6CP008984 | TssE | KPHS_32460 | 3236498..3236941 | - | 444 | YP_005227546.1 | type VI secretion system lysozyme-like protein |
| T6CP005807 | TssJ | KPHS_32470 | 3236944..3237432 | - | 489 | YP_005227547.1 | type VI secretion system lipoprotein TssJ |
| T6CP005808 | TssG | KPHS_32480 | 3237461..3238477 | - | 1017 | YP_005227548.1 | type VI secretion system baseplate subunit TssG |
| T6CP005809 | TssF | KPHS_32490 | 3238507..3240270 | - | 1764 | YP_005227549.1 | type VI secretion system baseplate subunit TssF |
| T6CP005810 | TssM | KPHS_32500 | 3240404..3243814 | - | 3411 | YP_005227550.1 | type VI secretion protein VasK |
| KPHS_32510 | 3243798..3244955 | - | 1158 | YP_005227551.1 | hypothetical protein | ||
| T6CP011988 | PAAR | KPHS_32520 | 3244959..3245225 | - | 267 | YP_005227552.1 | PAAR domain-containing protein |
| KPHS_32530 | 3245523..3245765 | - | 243 | YP_005227553.1 | hypothetical protein | ||
| KPHS_32540 | 3245834..3245947 | - | 114 | YP_005227554.1 | hypothetical protein | ||
| KPHS_32550 | 3245967..3246101 | - | 135 | YP_005227555.1 | hypothetical protein | ||
| KPHS_32560 | 3246085..3246312 | - | 228 | YP_005227556.1 | hypothetical protein | ||
| KPHS_32570 | 3246446..3247018 | - | 573 | YP_005227557.1 | sulfatase modifying factor 1 | ||
| KPHS_32580 | 3246982..3247335 | - | 354 | YP_005227558.1 | sulfatase modifying factor 1 | ||
| KPHS_32600 | 3247511..3247768 | - | 258 | YP_005227559.1 | hypothetical protein | ||
| KPHS_32590 | 3247846..3247968 | - | 123 | YP_005227560.1 | hypothetical protein | ||
| KPHS_32610 | 3248047..3249015 | + | 969 | YP_005227561.1 | transposase InsC for insertion sequence IS903 | ||
| KPHS_32620 | 3249137..3249349 | - | 213 | YP_005227562.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | ||
| KPHS_32630 | 3249645..3250538 | - | 894 | YP_005227563.1 | sulfatase modifying factor 1 | ||
| KPHS_32640 | 3250560..3250676 | - | 117 | YP_005227564.1 | hypothetical protein | ||
| KPHS_32650 | 3250722..3251615 | - | 894 | YP_005227565.1 | sulfatase modifying factor 1 -like protein | ||
| KPHS_32660 | 3251637..3251948 | - | 312 | YP_005227566.1 | hypothetical protein | ||
| KPHS_32670 | 3251966..3252994 | - | 1029 | YP_005227567.1 | hypothetical protein | ||
| KPHS_32680 | 3253359..3253886 | - | 528 | YP_005227568.1 | hypothetical protein | ||
| KPHS_32690 | 3253952..3254476 | - | 525 | YP_005227569.1 | hypothetical protein | ||
| KPHS_32700 | 3254553..3255149 | - | 597 | YP_005227570.1 | hypothetical protein | ||
| KPHS_32710 | 3255146..3255655 | - | 510 | YP_005227571.1 | hypothetical protein | ||
| KPHS_32720 | 3255656..3257011 | - | 1356 | YP_005227572.1 | S-type pyocin domain-containing protein | ||
| T6CP005811 | TssI | KPHS_32730 | 3257035..3259521 | - | 2487 | YP_005227573.1 | type VI secretion system tip protein VgrG |
| KPHS_32740 | 3259672..3259797 | - | 126 | YP_005227574.1 | hypothetical protein | ||
| T6CP011989 | TagL | KPHS_32750 | 3259981..3261678 | - | 1698 | YP_005227575.1 | OmpA family protein |
| T6CP008985 | TssL | KPHS_32760 | 3261682..3262335 | - | 654 | YP_005227576.1 | membrane protein |
| T6CP005812 | TssK | KPHS_32770 | 3262332..3263672 | - | 1341 | YP_005227577.1 | type VI secretion system baseplate subunit TssK |
| KPHS_32780 | 3263910..3264071 | - | 162 | YP_005227578.1 | hypothetical protein | ||
| KPHS_32790 | 3264242..3264571 | + | 330 | YP_005227579.1 | gamma-glutamylcyclotransferase | ||
| KPHS_32800 | 3264686..3265225 | + | 540 | YP_005227580.1 | putative nucleoprotein/polynucleotide-associated enzyme | ||
| KPHS_32810 | 3265251..3266042 | - | 792 | YP_005227581.1 | putative ribosomal large subunit pseudouridine synthase A | ||
| KPHS_32820 | 3266140..3266622 | + | 483 | YP_005227582.1 | cold shock protein E | ||
| KPHS_32830 | 3266732..3267631 | + | 900 | YP_005227583.1 | LysR family transcriptional regulator | ||
| KPHS_32840 | 3267606..3268415 | - | 810 | YP_005227584.1 | molybdate ABC transporter periplasmic substrate-binding protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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