Detailed information of component protein


Summary

Component ID T6CP011988
Component protein type PAAR
T6SS ID (Type) T6SS00549 insolico (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (89 a.a.); Nucleotide sequence (267 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) KPHS_32520
Coordinate (Strand) 3244959..3245225 (-)
NCBI ID YP_005227552.1
RefSeq NC_016845
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 1.4e-22 9..80
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-88 MSKGFVLLGDKTTHGGAVISASSTMIVNGKPVALVGDKVSCPIPGHGTNAIIEGAPEWSSDGKAIVVDGCKCQCGCQVISGAPECAIG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7714 - -


  Protein sequence: 89 a.a.    

>T6CP011988 NC_016845:c3245225-3244959 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [PAAR]
MSKGFVLLGDKTTHGGAVISASSTMIVNGKPVALVGDKVSCPIPGHGTNAIIEGAPEWSSDGKAIVVDGCKCQCGCQVIS
GAPECAIG*

  Nucleotide sequence: 267 bp    

>T6CP011988 NC_016845:c3245225-3244959 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [PAAR]
ATGTCCAAAGGTTTTGTATTACTCGGCGATAAAACCACGCACGGCGGTGCTGTTATTTCCGCATCCTCCACCATGATTGT
AAATGGAAAGCCCGTAGCGCTGGTGGGGGATAAAGTCAGCTGCCCGATTCCGGGACATGGCACTAATGCCATTATTGAGG
GAGCGCCGGAATGGTCTTCCGATGGTAAAGCCATCGTGGTCGATGGCTGCAAATGTCAGTGCGGTTGCCAGGTGATTTCC
GGCGCGCCGGAATGCGCGATAGGATAA