Detailed information of component protein
Summary
| Component ID | T6CP008985 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS00549  (Type Unknown) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (218 a.a.); Nucleotide sequence (654 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_32760 |
| Coordinate (Strand) | 3261682..3262335 (-) |
| NCBI ID | YP_005227576.1 |
| RefSeq | NC_016845 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| DotU | PF09850.11 | 2.9e-37 | 12..202 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-184 | MNTSESDLINKTFYPGWLMVSQLRCGQPVTDGEALYRQACRWVTEAREALTAGGVSEASAEQMLYAYCALLDESVLNRASQDDGYRRWRKDPLQARFFSTLNAGEELWERIRQLLREPTADAAVLTCFYRTLQLGFVGQYRAEDDERREDVAQALGARVPPFSMTQEAPVVVRASRLRSGRRMY |
| Transmembrane helix | 185-207 | WCGWAAGIVALAALWLTCSAMLS |
| Outside | 208-217 | QMVAQIAGQG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9588 | - | - |
Protein sequence: 218 a.a.
>T6CP008985 NC_016845:c3262335-3261682 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssL]
MNTSESDLINKTFYPGWLMVSQLRCGQPVTDGEALYRQACRWVTEAREALTAGGVSEASAEQMLYAYCALLDESVLNRAS
QDDGYRRWRKDPLQARFFSTLNAGEELWERIRQLLREPTADAAVLTCFYRTLQLGFVGQYRAEDDERREDVAQALGARVP
PFSMTQEAPVVVRASRLRSGRRMYWCGWAAGIVALAALWLTCSAMLSQMVAQIAGQG*
MNTSESDLINKTFYPGWLMVSQLRCGQPVTDGEALYRQACRWVTEAREALTAGGVSEASAEQMLYAYCALLDESVLNRAS
QDDGYRRWRKDPLQARFFSTLNAGEELWERIRQLLREPTADAAVLTCFYRTLQLGFVGQYRAEDDERREDVAQALGARVP
PFSMTQEAPVVVRASRLRSGRRMYWCGWAAGIVALAALWLTCSAMLSQMVAQIAGQG*
Nucleotide sequence: 654 bp
>T6CP008985 NC_016845:c3262335-3261682 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssL]
ATGAATACCTCTGAAAGCGATCTGATCAACAAAACTTTTTACCCGGGCTGGCTGATGGTCAGCCAGTTACGCTGCGGCCA
GCCGGTGACGGATGGCGAGGCGCTCTATCGCCAGGCCTGTCGATGGGTGACCGAGGCGCGCGAGGCGCTGACGGCGGGGG
GAGTCAGTGAAGCCAGCGCTGAGCAGATGCTCTATGCCTACTGCGCGCTGCTCGATGAGAGCGTCCTCAACCGCGCCAGT
CAGGATGATGGCTACCGCAGGTGGCGCAAGGATCCGCTGCAGGCGCGCTTTTTCAGCACTCTCAACGCCGGGGAAGAGCT
CTGGGAACGGATCCGCCAGCTGCTGCGAGAGCCCACGGCGGATGCGGCAGTGCTGACTTGTTTCTATCGTACTTTGCAAC
TGGGGTTTGTCGGACAGTACCGCGCCGAGGATGACGAACGGCGTGAGGACGTGGCGCAAGCGCTTGGCGCGCGGGTCCCG
CCGTTCAGCATGACCCAGGAGGCGCCGGTGGTGGTTCGTGCCTCCCGGCTGCGCAGCGGACGGCGGATGTACTGGTGCGG
CTGGGCGGCCGGCATTGTGGCGCTGGCGGCGCTGTGGTTGACCTGCTCCGCCATGCTGTCACAGATGGTGGCGCAGATAG
CAGGGCAGGGATAA
ATGAATACCTCTGAAAGCGATCTGATCAACAAAACTTTTTACCCGGGCTGGCTGATGGTCAGCCAGTTACGCTGCGGCCA
GCCGGTGACGGATGGCGAGGCGCTCTATCGCCAGGCCTGTCGATGGGTGACCGAGGCGCGCGAGGCGCTGACGGCGGGGG
GAGTCAGTGAAGCCAGCGCTGAGCAGATGCTCTATGCCTACTGCGCGCTGCTCGATGAGAGCGTCCTCAACCGCGCCAGT
CAGGATGATGGCTACCGCAGGTGGCGCAAGGATCCGCTGCAGGCGCGCTTTTTCAGCACTCTCAACGCCGGGGAAGAGCT
CTGGGAACGGATCCGCCAGCTGCTGCGAGAGCCCACGGCGGATGCGGCAGTGCTGACTTGTTTCTATCGTACTTTGCAAC
TGGGGTTTGTCGGACAGTACCGCGCCGAGGATGACGAACGGCGTGAGGACGTGGCGCAAGCGCTTGGCGCGCGGGTCCCG
CCGTTCAGCATGACCCAGGAGGCGCCGGTGGTGGTTCGTGCCTCCCGGCTGCGCAGCGGACGGCGGATGTACTGGTGCGG
CTGGGCGGCCGGCATTGTGGCGCTGGCGGCGCTGTGGTTGACCTGCTCCGCCATGCTGTCACAGATGGTGGCGCAGATAG
CAGGGCAGGGATAA