Detailed information of component protein


Summary

Component ID T6CP008985
Component protein type TssL
T6SS ID (Type) T6SS00549 insolico (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (218 a.a.); Nucleotide sequence (654 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 3261682..3262335 (-)
NCBI ID YP_005227576.1
RefSeq NC_016845
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-184 MNTSESDLINKTFYPGWLMVSQLRCGQPVTDGEALYRQACRWVTEAREALTAGGVSEASAEQMLYAYCALLDESVLNRASQDDGYRRWRKDPLQARFFSTLNAGEELWERIRQLLREPTADAAVLTCFYRTLQLGFVGQYRAEDDERREDVAQALGARVPPFSMTQEAPVVVRASRLRSGRRMY
Transmembrane helix 185-207 WCGWAAGIVALAALWLTCSAMLS
Outside 208-217 QMVAQIAGQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9588 - -


  Protein sequence: 218 a.a.    


  Nucleotide sequence: 654 bp