Detailed information of component protein


Summary

Component ID T6CP011989
Component protein type TagL
T6SS ID (Type) T6SS00549 insolico (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (566 a.a.); Nucleotide sequence (1698 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) KPHS_32750
Coordinate (Strand) 3259981..3261678 (-)
NCBI ID YP_005227575.1
RefSeq NC_016845
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 1.1e-18 435..531
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MRDNAR
Transmembrane helix 7-29 RLLTILTVILALWLVLGFWPLSI
Outside 30-32 GNQ
Transmembrane helix 33-50 VIFSLCILLAGGAALWRQ
Inside 51-313 RRRAVSRQRSEIVLPPEDFQGAVVLVCGDTDGLFPGRSAHGETRHGWYLRGDSAEQLPRLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWLNGLPPVWSVFWVTPPGGQAVESRWFTVTPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPFRARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAGITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRD
Transmembrane helix 314-333 AGLAAGVGFLFLALAMLASF
Outside 334-565 INNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPFVEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRSNQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGAETNGLKSETE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9967 - -


  Protein sequence: 566 a.a.    

>T6CP011989 NC_016845:c3261678-3259981 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TagL]
MRDNARRLLTILTVILALWLVLGFWPLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRSEIVLPPEDFQGAVVLVCGDT
DGLFPGRSAHGETRHGWYLRGDSAEQLPRLAQYLAAARPALVSQVSVLLAVVPEHHPSGEHLAQSLRDWRRSIVQCRTWL
NGLPPVWSVFWVTPPGGQAVESRWFTVTPERPGLQVQQKGQAPQAVAGWQREGSPASRLHQTLWLESILTLAENALFRPF
RARQAELPPLNLCAAGICLTPVAAVANNLWQQQIAGITTLSPGNDAAPGPHPLPDLLLSSLPHRHGVSRRMRDAGLAAGV
GFLFLALAMLASFINNQRLVRSVGDHLAVYHRLSGTPPTPKLQAQQRLRADSRLLDDWLRRGEPLRYRLGLYQGGRLIPF
VEAAINDWAPPPPPRPVIKQVVQGPQTIRLDSMALFDTGKSALKPGSTKLLVNSLLGIKAKPGWLIVVAGHTDSIGNDRS
NQQLSLKRAEAVRDWMRDTGDVPESCFAVQGYGASRPVASNETPEGRAQNRRVEISLVPQKDACLTPGTANTSGAETNGL
KSETE*

  Nucleotide sequence: 1698 bp    

>T6CP011989 NC_016845:c3261678-3259981 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TagL]
ATGCGTGATAACGCTCGTCGTCTGCTTACGATACTGACCGTCATCCTGGCCCTGTGGCTAGTGCTGGGCTTCTGGCCGCT
GTCCATCGGCAACCAGGTGATCTTCAGTCTGTGCATCCTGCTGGCGGGCGGCGCGGCGCTCTGGCGTCAGCGTCGCCGGG
CAGTCAGCCGTCAGCGATCGGAAATCGTCCTGCCGCCCGAGGATTTTCAGGGGGCAGTGGTTCTGGTCTGCGGGGATACC
GACGGTCTGTTTCCCGGGCGTTCGGCGCACGGCGAAACCCGTCACGGCTGGTATCTACGGGGAGACAGCGCGGAGCAGTT
GCCGCGGCTGGCGCAGTACCTGGCGGCGGCGCGTCCGGCACTGGTATCGCAGGTTTCCGTGCTGCTGGCGGTGGTACCGG
AGCACCACCCCTCCGGGGAGCATCTGGCGCAGTCGCTGCGCGACTGGCGGCGGAGTATCGTTCAGTGCCGAACCTGGCTA
AACGGTCTGCCGCCGGTGTGGAGCGTGTTCTGGGTGACGCCGCCAGGCGGCCAGGCCGTGGAAAGCCGCTGGTTTACCGT
CACGCCGGAGAGGCCTGGTCTCCAGGTGCAGCAGAAGGGACAAGCGCCCCAGGCGGTTGCCGGGTGGCAGCGGGAGGGCA
GCCCTGCCTCACGCCTGCATCAGACGCTGTGGCTGGAGAGCATTCTGACCTTGGCCGAAAACGCTCTTTTCCGGCCATTC
CGCGCCCGGCAGGCAGAACTTCCTCCGCTGAACCTGTGTGCCGCGGGCATCTGCCTTACGCCGGTGGCGGCGGTGGCGAA
TAACCTCTGGCAACAGCAAATCGCCGGGATCACCACGCTCTCCCCGGGCAACGACGCGGCGCCAGGTCCTCACCCGCTGC
CGGATCTTCTTCTGTCGTCACTGCCGCACCGCCACGGGGTCAGCCGCCGGATGCGCGATGCCGGTCTTGCCGCTGGGGTG
GGCTTCCTCTTTCTGGCGCTGGCGATGCTGGCTTCCTTTATCAACAACCAGCGCCTGGTGCGCAGCGTCGGCGATCATCT
GGCGGTGTATCACCGCCTCAGCGGCACGCCGCCGACGCCGAAGCTGCAGGCGCAGCAGCGTCTGCGTGCCGACAGCCGCC
TGCTGGATGACTGGTTGCGCCGGGGGGAGCCGCTGCGTTATCGGCTGGGGCTGTATCAGGGGGGGCGGCTGATCCCCTTC
GTTGAAGCCGCTATCAATGACTGGGCGCCGCCCCCGCCGCCGCGTCCGGTCATTAAGCAGGTTGTGCAGGGGCCGCAGAC
GATCCGCCTCGATAGCATGGCGCTGTTCGATACCGGCAAATCGGCGCTGAAACCGGGTTCGACAAAGCTGCTGGTGAACT
CGCTGCTGGGCATTAAGGCCAAACCCGGCTGGCTGATCGTGGTGGCAGGCCATACCGACAGCATCGGCAACGATAGATCC
AATCAACAACTCTCCCTGAAGCGTGCCGAGGCGGTCCGCGACTGGATGCGCGATACCGGCGATGTTCCGGAGAGCTGTTT
TGCGGTGCAGGGCTACGGCGCAAGCCGTCCTGTCGCCAGCAACGAGACGCCAGAGGGACGGGCGCAAAATCGCCGGGTGG
AGATCAGTCTGGTCCCGCAGAAGGACGCCTGTCTGACGCCGGGCACGGCCAATACCTCAGGAGCAGAGACTAACGGATTA
AAAAGCGAAACCGAGTAA