Detailed information of component protein


Summary

Component ID T6CP005809
Component protein type TssF
T6SS ID (Type) T6SS00549 insolico (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (588 a.a.); Nucleotide sequence (1764 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) KPHS_32490
Coordinate (Strand) 3238507..3240270 (-)
NCBI ID YP_005227549.1
RefSeq NC_016845
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6.3e-182 1..582
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-587 MDDLTLRYFDAEMRYLREAAKAFAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLWPHYLRTIPSLSIVALTPTLPAMKIAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSALRLRFACSELADWSQTDLRHLALYLGEDAVTGSALHLWLTRRQAALYLRLPGQTERVSLDGYFSPGGFSEEDRLWPKGESAFSGYQLLLEYFTFREKFMFVQLNGLENITLPAGISHFTLEVVFSEVWQSDLPVSASSLRLHCVPVINLFTLEADPLTISGLENEYLLRPKRLQDGHTEIYSVDSVTGSGRTGEARYVPFTRFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILGGQQWEADRELARETVSLRITGTNGQLPRRALQSTLLDRCESISATPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRFLNMMSSAEVLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFEQGFLLRGLDIEVTLDGSGFTGAGDVHLFGDMLNRFFALYADMNQFNQLTLIVQPEGKCIRWKENHSLRLPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9934 - -


  Protein sequence: 588 a.a.    

>T6CP005809 NC_016845:c3240270-3238507 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssF]
MDDLTLRYFDAEMRYLREAAKAFAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLW
PHYLRTIPSLSIVALTPTLPAMKIAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSALRLRF
ACSELADWSQTDLRHLALYLGEDAVTGSALHLWLTRRQAALYLRLPGQTERVSLDGYFSPGGFSEEDRLWPKGESAFSGY
QLLLEYFTFREKFMFVQLNGLENITLPAGISHFTLEVVFSEVWQSDLPVSASSLRLHCVPVINLFTLEADPLTISGLENE
YLLRPKRLQDGHTEIYSVDSVTGSGRTGEARYVPFTRFRHQGGMMRRHAPERYYHTRVKRGVTGMHDTWLILGGQQWEAD
RELARETVSLRITGTNGQLPRRALQSTLLDRCESISATPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRFLNMMSSAE
VLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFEQGFLLRGLDIEVTLDGSGFTGAGDVHLFGDMLNRFFALYADMNQ
FNQLTLIVQPEGKCIRWKENHSLRLPG*

  Nucleotide sequence: 1764 bp    

>T6CP005809 NC_016845:c3240270-3238507 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssF]
ATGGACGATTTAACCCTGCGATATTTTGATGCTGAAATGCGCTACCTGCGCGAGGCGGCAAAAGCGTTCGCGCAGGCTCA
CCCCGATCGGGCGGCGATGCTGGATCTCGATAAAGCCGGTACGCCGGACCCTTATGTAGAGCGCCTGTTTGAAGGCTTTG
CCTTTTCCGTAGGTCGCTTGCGCGAAAAAATTGATGATGATCTGCCGGAGCTGACCGAGGGGCTGGTCAGCATGCTGTGG
CCGCACTATTTGCGCACTATTCCATCGCTATCGATCGTGGCGCTGACCCCAACGCTGCCGGCGATGAAGATAGCGGAAAC
GGTGCCCGCCGGGTTTGAGATTAGCTCCCGCCCACTGGGGCCGAAAAATACCGTGTGCCGGTACCGAACCACCCGCGATC
TGACGCTTAACCCGCTGGCGATAGAGGAGGCGGTGATGACGGCGGAGCCGGACGGACGTTCGGCCCTGCGACTACGATTC
GCCTGTAGCGAGCTGGCTGACTGGTCGCAGACCGATCTCCGCCACCTGGCGCTGTACCTGGGGGAAGACGCTGTTACCGG
CAGCGCCCTCCATCTGTGGCTGACCCGACGCCAGGCCGCGCTGTACCTGCGTCTGCCGGGTCAGACAGAGCGGGTAAGCC
TCGACGGCTATTTTTCCCCGGGGGGATTCAGCGAGGAGGATCGTTTATGGCCGAAGGGGGAGAGTGCTTTCAGCGGCTAT
CAGCTGCTGCTCGAGTATTTCACCTTTCGCGAAAAATTTATGTTCGTGCAGCTAAATGGCCTGGAAAACATCACCCTGCC
GGCGGGGATATCGCATTTCACGCTTGAGGTGGTGTTCAGCGAGGTCTGGCAAAGTGATTTACCCGTCAGCGCAAGCAGCC
TACGCCTGCACTGTGTGCCGGTGATTAACCTGTTTACCCTTGAGGCCGATCCGTTGACCATCAGCGGCCTGGAGAACGAA
TACCTCCTGCGTCCGAAGCGCCTGCAGGACGGGCATACCGAAATCTATTCTGTTGACAGCGTGACCGGCTCCGGGCGCAC
CGGGGAGGCACGCTATGTGCCTTTCACCCGCTTTCGTCACCAGGGGGGAATGATGCGTCGCCATGCGCCGGAGCGCTACT
ACCACACCCGCGTAAAACGGGGCGTAACCGGCATGCACGATACCTGGCTTATCCTCGGCGGACAGCAATGGGAGGCTGAC
CGGGAGCTGGCGCGGGAAACGGTCTCCTTGCGCATCACCGGCACTAACGGCCAGCTGCCGCGCCGGGCGCTACAGAGCAC
GCTGCTGGATCGCTGTGAGTCGATATCAGCCACGCCGCTTACCGTCCGCAATCTCTGTAAGCCCACGCTGCCGGCCTATC
CCCCGGCGGAAGACCGCTACCACTGGCGGGTCATGAGCCATCTGGGCACCCGTTTTCTCAACATGATGAGCAGCGCCGAG
GTGCTGCGCGGCACGCTGTCGCTCTACAACTGGCGGGAGGATGAGCTCAATAATCGCCGTCTGGACGCCATTCTGGCGGT
CAGCCATCACCGAATTCAGCGTTTCGAGCAGGGTTTCCTGCTGCGCGGGCTGGATATTGAAGTGACGCTCGACGGTAGCG
GATTTACCGGTGCGGGCGATGTCCACCTGTTTGGCGATATGCTCAACCGCTTTTTCGCACTGTATGCCGATATGAATCAG
TTCAACCAGCTGACGCTCATTGTTCAACCTGAAGGGAAATGTATCCGGTGGAAAGAGAATCACAGTCTGCGCCTGCCCGG
CTGA