Detailed information of component protein


Summary

Component ID T6CP005812
Component protein type TssK
T6SS ID (Type) T6SS00549 insolico (Type Unknown)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) KPHS_32770
Coordinate (Strand) 3262332..3263672 (-)
NCBI ID YP_005227577.1
RefSeq NC_016845
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.2e-131 18..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MKIFRPLWRDGAFLVPQQFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFTDGTLIDTELADILPPVRDVSDVMQDSVEVLLALPLLSASGGNLDDGQESARPRRWRAEQVTVQELAGHERSELAVLRHALTLRLSTEENAAFLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARRRRLMAMRRESNARMADFAVADVSLFWLLNALNSAEPVLSELHLDPSRHPELLYRELARLAGSLLTFSLEHHLEAIPRYRHASPEQVFPPLFALLDTLLEVSLPSRVIAIVLEQGADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPLRLENQYFALDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAVLRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9876 - -


  Protein sequence: 447 a.a.    

>T6CP005812 NC_016845:c3263672-3262332 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssK]
MKIFRPLWRDGAFLVPQQFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFTDGTLIDTELAD
ILPPVRDVSDVMQDSVEVLLALPLLSASGGNLDDGQESARPRRWRAEQVTVQELAGHERSELAVLRHALTLRLSTEENAA
FLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARRRRLMAMRRESNARMADFAVADVSLFWLLN
ALNSAEPVLSELHLDPSRHPELLYRELARLAGSLLTFSLEHHLEAIPRYRHASPEQVFPPLFALLDTLLEVSLPSRVIAI
VLEQGADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPL
RLENQYFALDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAVLRS*

  Nucleotide sequence: 1341 bp    

>T6CP005812 NC_016845:c3263672-3262332 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssK]
ATGAAGATTTTCCGCCCATTATGGCGCGACGGGGCTTTTCTGGTCCCGCAGCAGTTTCAGCAACAGGCCCGCTGGGACGC
GCACGTCGCCGATACGGTCTCCCGCATGGCGCTCGCCCACCCGTGGGGGGTATTGCGCGCGGAGTTTGACGCGAGCGCGC
TCACCCTTTCCCGGCTCAACGCTACCCGGCTGATCGTGCGTTTCACCGACGGAACGCTGATTGACACCGAGCTGGCGGAT
ATTTTGCCACCGGTCCGCGATGTATCGGACGTGATGCAGGACAGCGTGGAGGTTCTGCTCGCTCTGCCGCTGCTCAGCGC
CAGCGGCGGCAATCTTGATGACGGCCAGGAGAGCGCCCGCCCGCGCCGCTGGCGCGCCGAGCAGGTGACCGTCCAGGAGC
TGGCCGGCCATGAACGCAGCGAGCTGGCCGTTCTGCGGCACGCGCTAACGCTGCGTCTCTCCACCGAGGAAAATGCAGCC
TTCCTCACCTGCCCGGTAGCGCGTCTGGTGCGCGACGCCCAGGGGCAGTGGATCGTTGACCCGGAATTCATCCCGCCGCT
GCTGTCGCTGGCGGCAAGCCCGACGCTGGTCAGCGAGCTGGGCGAGCTGTTACATCGCCTGCAGGCCCGACGCAGACGCC
TGATGGCCATGCGTCGTGAAAGCAATGCGCGGATGGCTGATTTTGCCGTGGCGGATGTTTCCCTGTTCTGGCTGCTCAAC
GCGCTGAACAGCGCTGAACCGGTGCTCAGCGAGCTGCATCTGGATCCCTCGCGCCATCCGGAGCTGCTTTATCGCGAACT
GGCCAGGCTGGCCGGCAGTCTGCTGACTTTCTCCCTTGAACATCATCTGGAAGCAATCCCCCGCTACCGGCATGCCTCGC
CAGAGCAGGTATTCCCACCGCTGTTTGCCCTGCTGGATACGCTGCTCGAAGTCAGCCTGCCCTCAAGGGTGATCGCCATC
GTTCTGGAGCAGGGCGCCGACCGGGAGATCTGGCGGGGCAGGCTGCACGATGCGCGGCTGCGCGAGGGGGCGGATTTTTA
TCTGTCGGTGCGCTCTTCACTCCCCCCTCACCAGCTACAGAGCCGCTTTCCGCAGCTCTGTAAGGCGGGTAGCCATGATG
ATGTCGCCGAGGTCGTCAATATTGCCCTCAGCGGCATCGCGATCAAACCGCTGAGCCATGTGCCGGCGGCCATTCCGCTA
CGTCTGGAAAACCAATATTTCGCTCTGGATCTCTCCACCGATGCCGCCCGCGCGATGCTGGAGGCCGGCAACTGCACCTT
CTATACCCCGGAATCGCTTGGCGACGTGAAACTTGAACTCTTTGCGGTACTGCGCTCATGA