Detailed information of component protein
Summary
| Component ID | T6CP005808 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00549  (Type Unknown) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (339 a.a.); Nucleotide sequence (1017 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_32480 |
| Coordinate (Strand) | 3237461..3238477 (-) |
| NCBI ID | YP_005227548.1 |
| RefSeq | NC_016845 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 2.8e-74 | 1..298 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-338 | MNFYRFCQLLEKNHPKAPIIGSGWLVGDEPIRFRPHPGMGFPAGEIRAMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSDDIAQRREGVEATEDFLDIFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVAAAPLSRFLALLPVMMLPGRSGEGMEALVALLAPGTRATVYHHDPCRIPLSQPLTMSVRQPVSLQHRPVMGTHATDVNGQVLLQLATEKPDEVRGWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLCCQQEHAVQLGRTAVLRPLDAQKQADDRVTIYLGRYQRVRENIHRRESDEDGDYRS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9780 | - | - |
Protein sequence: 339 a.a.
>T6CP005808 NC_016845:c3238477-3237461 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssG]
MNFYRFCQLLEKNHPKAPIIGSGWLVGDEPIRFRPHPGMGFPAGEIRAMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSD
DIAQRREGVEATEDFLDIFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVAAAPLSRFLALLPV
MMLPGRSGEGMEALVALLAPGTRATVYHHDPCRIPLSQPLTMSVRQPVSLQHRPVMGTHATDVNGQVLLQLATEKPDEVR
GWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLCCQQEHAVQLGRTAVLRPLDAQKQADDRVTIYLGRYQR
VRENIHRRESDEDGDYRS*
MNFYRFCQLLEKNHPKAPIIGSGWLVGDEPIRFRPHPGMGFPAGEIRAMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSD
DIAQRREGVEATEDFLDIFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVAAAPLSRFLALLPV
MMLPGRSGEGMEALVALLAPGTRATVYHHDPCRIPLSQPLTMSVRQPVSLQHRPVMGTHATDVNGQVLLQLATEKPDEVR
GWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLCCQQEHAVQLGRTAVLRPLDAQKQADDRVTIYLGRYQR
VRENIHRRESDEDGDYRS*
Nucleotide sequence: 1017 bp
>T6CP005808 NC_016845:c3238477-3237461 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssG]
ATGAATTTTTACCGCTTCTGCCAGTTGCTGGAGAAGAACCATCCGAAGGCGCCGATCATCGGCAGCGGCTGGCTAGTAGG
TGATGAACCCATACGCTTTCGCCCGCATCCGGGGATGGGCTTTCCGGCTGGCGAAATCCGTGCAATGGACGATCCTGAAC
CGCCCCGTCCGCCGGCGGTTCGCGTGACTTTTATGGGACTCTACGGCGTGGAATCCCCGCTGCCGACCCACTATAGCGAT
GACATTGCGCAACGGCGGGAAGGCGTCGAGGCCACCGAGGATTTCCTCGATATCTTTAACCATCGGCTGATCGCCCAGTA
TTACCGTATCTGGCGCAAATATTCCTACCCGGCAACCTTTCGGGCGGGCGGCACGGACAACATCTCGCAGTATCTGCTGG
GCCTGGCGGGGCTGGGCATACCGGGATGTGCCGCCGTTGCCGCAGCGCCGCTGTCGCGATTTCTGGCGCTGCTGCCGGTG
ATGATGCTGCCGGGGAGATCCGGGGAAGGCATGGAGGCGCTGGTGGCGCTCCTGGCCCCGGGGACCCGGGCGACGGTGTA
CCACCACGATCCCTGCCGGATCCCCTTGTCGCAGCCGTTAACGATGAGCGTCCGTCAGCCGGTTAGCCTGCAACATAGGC
CAGTGATGGGAACCCACGCCACGGATGTGAACGGTCAGGTATTGCTGCAGCTGGCCACGGAAAAGCCTGATGAGGTTCGC
GGCTGGCTGCCCGGCGGCGAACTGTTCAGCGACCTGATGGCGCTTCTGCACGTCTGGCTCGGATCTCATCTTGACGTGCG
GCTGCAGCTTTGCGTCGCCCGCCATTTACTGCCGGATGCGCAACTTTGCTGCCAGCAGGAGCATGCCGTCCAGCTCGGCC
GTACCGCTGTGCTGCGTCCGCTGGATGCGCAGAAACAGGCTGACGACAGAGTCACGATTTATCTGGGGCGCTATCAGCGC
GTCCGGGAAAATATCCACCGCAGGGAGAGCGATGAAGATGGCGATTACCGCAGTTAA
ATGAATTTTTACCGCTTCTGCCAGTTGCTGGAGAAGAACCATCCGAAGGCGCCGATCATCGGCAGCGGCTGGCTAGTAGG
TGATGAACCCATACGCTTTCGCCCGCATCCGGGGATGGGCTTTCCGGCTGGCGAAATCCGTGCAATGGACGATCCTGAAC
CGCCCCGTCCGCCGGCGGTTCGCGTGACTTTTATGGGACTCTACGGCGTGGAATCCCCGCTGCCGACCCACTATAGCGAT
GACATTGCGCAACGGCGGGAAGGCGTCGAGGCCACCGAGGATTTCCTCGATATCTTTAACCATCGGCTGATCGCCCAGTA
TTACCGTATCTGGCGCAAATATTCCTACCCGGCAACCTTTCGGGCGGGCGGCACGGACAACATCTCGCAGTATCTGCTGG
GCCTGGCGGGGCTGGGCATACCGGGATGTGCCGCCGTTGCCGCAGCGCCGCTGTCGCGATTTCTGGCGCTGCTGCCGGTG
ATGATGCTGCCGGGGAGATCCGGGGAAGGCATGGAGGCGCTGGTGGCGCTCCTGGCCCCGGGGACCCGGGCGACGGTGTA
CCACCACGATCCCTGCCGGATCCCCTTGTCGCAGCCGTTAACGATGAGCGTCCGTCAGCCGGTTAGCCTGCAACATAGGC
CAGTGATGGGAACCCACGCCACGGATGTGAACGGTCAGGTATTGCTGCAGCTGGCCACGGAAAAGCCTGATGAGGTTCGC
GGCTGGCTGCCCGGCGGCGAACTGTTCAGCGACCTGATGGCGCTTCTGCACGTCTGGCTCGGATCTCATCTTGACGTGCG
GCTGCAGCTTTGCGTCGCCCGCCATTTACTGCCGGATGCGCAACTTTGCTGCCAGCAGGAGCATGCCGTCCAGCTCGGCC
GTACCGCTGTGCTGCGTCCGCTGGATGCGCAGAAACAGGCTGACGACAGAGTCACGATTTATCTGGGGCGCTATCAGCGC
GTCCGGGAAAATATCCACCGCAGGGAGAGCGATGAAGATGGCGATTACCGCAGTTAA