Detailed information of component protein
Summary
| Component ID | T6CP005807 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00549  (Type Unknown) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (163 a.a.); Nucleotide sequence (489 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_32470 |
| Coordinate (Strand) | 3236944..3237432 (-) |
| NCBI ID | YP_005227547.1 |
| RefSeq | NC_016845 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 7.6e-33 | 31..151 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-162 | MVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFKEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9405 | - | - |
Protein sequence: 163 a.a.
>T6CP005807 NC_016845:c3237432-3236944 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssJ]
MVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDG
QALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFK
EK*
MVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDG
QALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDLTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFK
EK*
Nucleotide sequence: 489 bp
>T6CP005807 NC_016845:c3237432-3236944 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssJ]
ATGGTTACCGTCTTAACCGGCTGCGGACTGACGCAGACCGTGAAAGACGGCGCCGTTTCCGTGACCCAGTCCATTTTTTA
CCCCCAGGTGAAAACCCTGCATCTGGATCTTCGCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGA
CGGTGGTGCGTATTTATCAGCTGAAGGACCGGCAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGC
CAGGCGCTGCAGGCGGACCGGGTGGCGGAAAAAGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCAT
GGAAACCAGCGCGCAGTTTGTGGCGGTGGCGGCCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTAC
TCACCCGGGACGAACTTGATCCGGCGAGGCCGCGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAG
GAGAAGTGA
ATGGTTACCGTCTTAACCGGCTGCGGACTGACGCAGACCGTGAAAGACGGCGCCGTTTCCGTGACCCAGTCCATTTTTTA
CCCCCAGGTGAAAACCCTGCATCTGGATCTTCGCGCCCGGGAAGGCGTGAATAACAACGCCAAAGGCGCCTCCCTGGCGA
CGGTGGTGCGTATTTATCAGCTGAAGGACCGGCAAGCGTTCGACAATACTGACTACCCGTCGCTGTTTGCCGGCGATGGC
CAGGCGCTGCAGGCGGACCGGGTGGCGGAAAAAGATGTTCGCCTGCGTCCGGGCGAATCGGTGACCGTCGATATGCCCAT
GGAAACCAGCGCGCAGTTTGTGGCGGTGGCGGCCATGTTTATCGATCCAGACCTGACGCAAAACAGCTGGCGGCTGGTAC
TCACCCGGGACGAACTTGATCCGGCGAGGCCGCGCATTATCGAAGCCAGCCAAAATCAACTGACGCTGCACCCGTTTAAG
GAGAAGTGA