Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   GZL_RS33765 Genome accession   NZ_CP003987
Coordinates   7926646..7927311 (+) Length   221 a.a.
NCBI ID   WP_039638127.1    Uniprot ID   A0ABY8AJT0
Organism   Streptomyces sp. 769     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7921646..7932311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS33750 (GZL_07329) - 7922391..7923752 (-) 1362 WP_039638123.1 dipeptidase -
  GZL_RS33755 (GZL_07330) - 7923930..7925210 (+) 1281 WP_039638124.1 geranylgeranyl reductase family protein -
  GZL_RS33760 (GZL_07331) - 7925399..7926649 (+) 1251 WP_039638125.1 sensor histidine kinase -
  GZL_RS33765 (GZL_07332) vraR 7926646..7927311 (+) 666 WP_039638127.1 response regulator transcription factor Regulator
  GZL_RS33770 (GZL_07333) - 7927360..7928115 (-) 756 WP_039638129.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  GZL_RS33775 (GZL_07334) - 7928315..7929475 (-) 1161 WP_039638130.1 MFS transporter -
  GZL_RS33780 (GZL_07335) - 7929664..7930890 (+) 1227 WP_039638131.1 ROK family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23947.76 Da        Isoelectric Point: 5.1877

>NTDB_id=99729 GZL_RS33765 WP_039638127.1 7926646..7927311(+) (vraR) [Streptomyces sp. 769]
MIRVLLADDQLLVRAGFKALLNAQSDIEVVGEAADGQEALTAVRAHRPDVVLMDIRMPVVDGLAATRRITEDPTLRDVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAAVAGDALLSPGVTRRLIAEFAARSKEPAPSAELAALTERER
EVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=99729 GZL_RS33765 WP_039638127.1 7926646..7927311(+) (vraR) [Streptomyces sp. 769]
GTGATCCGGGTACTGCTCGCCGACGACCAGCTGTTGGTCCGGGCCGGCTTCAAGGCGCTGCTGAACGCCCAGTCCGACAT
CGAGGTGGTCGGCGAGGCGGCGGACGGCCAGGAGGCGCTGACCGCCGTCCGCGCGCACCGGCCGGACGTGGTCCTGATGG
ACATCCGGATGCCGGTCGTCGACGGCCTGGCCGCCACCCGGCGGATCACCGAGGACCCGACACTGCGGGACGTCAAGGTC
GTCATGCTGACCACCTTCGAACTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGCGCCTCCGGCTTCCTGGTCAAGGA
CACCGAACCGGAGGAGTTGTTGAGGGCGGTGCGCGCGGCGGTGGCCGGCGACGCGCTGCTCTCGCCGGGGGTGACCCGCC
GGCTGATCGCGGAGTTCGCCGCCCGTTCCAAGGAGCCGGCGCCGTCCGCCGAACTCGCCGCGCTCACCGAACGCGAGCGG
GAGGTGATGGCCCTGGTGGGCATCGGGCTCTCCAACGAGGAGATCGCCCGCCGGCTGGTGGTCAGCCCGCTCACCGCCAA
GACACACGTCAGCCGCACCATGGTCAAGCTGGGCGCCCGCGACCGCGCCCAACTCGTGGTACTGGCCTATGAGTCGGGGC
TGGTGCGCCCGGGCTGGCTCGGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

97.285

0.38
  degU Bacillus subtilis subsp. subtilis str. 168

36.444

100

0.371

Multiple sequence alignment