Detailed information NTG0099072

Bioinformatically predicted

Overview

• Name: comX/comX2
• Type: Regulator
• Locus tag: SP4011_RS00165
• Genome accession: NZ_AP026968
• Coordinates: 27323..27802 (+)
• Length: 159 a.a.
• NCBI ID: WP_338619411.1
• Uniprot ID: -
• Organism: Streptococcus parapneumoniae strain SP4011
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	28070..28966	27323..27802	flank	268

Gene organization within MGE regions

Location: 27323..28966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SP4011_RS00165 (SP4011_00340)	comX/comX2	27323..27802 (+)	480	WP_338619411.1	sigma-70 family RNA polymerase sigma factor	Regulator
SP4011_RS00170 (SP4011_00350)	-	28088..28966 (-)	879	Protein_33	transposase	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 19981.66 Da
• Isoelectric Point: 7.4296

>NTDB_id=99072 SP4011_RS00165 WP_338619411.1 27323..27802(+) (comX/comX2) [Streptococcus parapneumoniae strain SP4011]
MLKELYEEVQGSVYKCRNEYYLHLWELSDWDQEGMLCLHELISREEELVEDIPRLRKYFKTKFRNRILDYIRKQESHKRR
YNKEPYEEVGEISHRISEGGLWLDDYYLFHETLKNYRSKESKEKQEELERILRNERFRGRQRVLRDLRIVFKEFDIRSH

Nucleotide

• Length: 480 bp

>NTDB_id=99072 SP4011_RS00165 WP_338619411.1 27323..27802(+) (comX/comX2) [Streptococcus parapneumoniae strain SP4011]
ATGCTTAAAGAATTGTATGAAGAAGTCCAGGGGAGTGTGTACAAGTGTAGAAATGAATATTACTTGCATTTATGGGAATT
GTCGGATTGGGACCAAGAAGGCATGCTCTGCTTACATGAATTGATTAGTAGAGAAGAAGAATTGGTAGAAGATATCCCTC
GTTTAAGGAAATATTTCAAAACTAAGTTTCGAAATCGAATTTTAGACTATATCCGTAAGCAAGAAAGCCACAAACGAAGA
TATAATAAAGAACCATATGAAGAAGTGGGTGAGATCAGTCATCGTATAAGTGAGGGCGGTCTGTGGCTAGATGATTATTA
TCTCTTTCATGAAACATTAAAAAATTATAGAAGCAAAGAAAGTAAAGAGAAACAAGAAGAGCTAGAACGCATTTTAAGAA
ATGAACGATTCCGAGGGCGTCAAAGAGTGTTAAGAGACTTACGTATTGTGTTTAAAGAGTTTGACATCCGTAGCCATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/comX1	Streptococcus pneumoniae Rx1	91.195	100	0.912
comX/comX2	Streptococcus pneumoniae Rx1	91.195	100	0.912
comX/comX2	Streptococcus pneumoniae D39	91.195	100	0.912
comX/comX1	Streptococcus pneumoniae D39	91.195	100	0.912
comX/comX2	Streptococcus pneumoniae R6	91.195	100	0.912
comX/comX1	Streptococcus pneumoniae R6	91.195	100	0.912
comX/comX1	Streptococcus pneumoniae TIGR4	90.566	100	0.906
comX/comX2	Streptococcus pneumoniae TIGR4	90.566	100	0.906
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	89.937	100	0.899
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	89.308	100	0.893
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	88.679	100	0.887
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	87.975	99.371	0.874
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	48.718	98.113	0.478
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	48.718	98.113	0.478
comX/sigX	Streptococcus mutans UA159	47.333	94.34	0.447
comX/sigX	Streptococcus suis isolate S10	41.722	94.969	0.396
comX/sigX	Streptococcus suis P1/7	41.722	94.969	0.396
comX/sigX	Streptococcus suis D9	41.722	94.969	0.396
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	40.132	95.597	0.384
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	40.132	95.597	0.384
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	40.94	93.711	0.384
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	40.94	93.711	0.384
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	40.94	93.711	0.384
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	40.94	93.711	0.384
comX	Streptococcus salivarius SK126	39.333	94.34	0.371
comX	Streptococcus thermophilus LMG 18311	39.333	94.34	0.371
comX	Streptococcus thermophilus LMD-9	39.333	94.34	0.371
comX/sigX	Streptococcus salivarius strain HSISS4	38.667	94.34	0.365