Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   AAFX12_RS02205 Genome accession   NZ_CP151938
Coordinates   458014..459120 (+) Length   368 a.a.
NCBI ID   WP_064368776.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain TBV025     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453014..464120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX12_RS02170 (AAFX12_02170) - 453053..453655 (-) 603 WP_005381009.1 XTP/dITP diphosphatase -
  AAFX12_RS02175 (AAFX12_02175) - 453774..454205 (-) 432 WP_005381010.1 DUF4426 domain-containing protein -
  AAFX12_RS02180 (AAFX12_02180) yggU 454335..454625 (-) 291 WP_005393980.1 DUF167 family protein YggU -
  AAFX12_RS02185 (AAFX12_02185) - 454625..455182 (-) 558 WP_005381012.1 YggT family protein -
  AAFX12_RS02190 (AAFX12_02190) proC 455235..456053 (-) 819 WP_005381013.1 pyrroline-5-carboxylate reductase -
  AAFX12_RS02195 (AAFX12_02195) - 456213..456914 (-) 702 WP_005384521.1 YggS family pyridoxal phosphate-dependent enzyme -
  AAFX12_RS02200 (AAFX12_02200) pilT 456943..457983 (+) 1041 WP_005381015.1 type IV pilus twitching motility protein PilT Machinery gene
  AAFX12_RS02205 (AAFX12_02205) pilU 458014..459120 (+) 1107 WP_064368776.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AAFX12_RS02210 (AAFX12_02210) ruvX 459182..459607 (-) 426 WP_005381017.1 Holliday junction resolvase RuvX -
  AAFX12_RS02215 (AAFX12_02215) - 459643..460206 (-) 564 WP_005381020.1 YqgE/AlgH family protein -
  AAFX12_RS02220 (AAFX12_02220) gshB 460335..461285 (-) 951 WP_064368775.1 glutathione synthase -
  AAFX12_RS02225 (AAFX12_02225) rsmE 461299..462030 (-) 732 WP_017821890.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AAFX12_RS02230 (AAFX12_02230) endA 462144..462839 (-) 696 WP_017821889.1 deoxyribonuclease I -
  AAFX12_RS02235 (AAFX12_02235) - 462990..463487 (-) 498 WP_064368774.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41284.39 Da        Isoelectric Point: 6.5943

>NTDB_id=981349 AAFX12_RS02205 WP_064368776.1 458014..459120(+) (pilU) [Vibrio alginolyticus strain TBV025]
MDLDKFLEGMLALKASDLYITVGAPILFRVDGELRPQGEKLTESDVAALLDSAMEPDRRQEFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETNIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNSNKTGHILTVEDPI
EFVHEHKRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKDQKEQFLFDLSMNLKGVVGQQLIRDKNGQGRHGVFEILLNSPRVSDLIRRGDLHELKSTMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEAFSTSSLANVKIDMD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=981349 AAFX12_RS02205 WP_064368776.1 458014..459120(+) (pilU) [Vibrio alginolyticus strain TBV025]
ATGGATCTAGATAAATTTCTCGAAGGCATGCTGGCGCTGAAAGCGTCGGATCTTTACATCACGGTTGGAGCGCCAATTCT
ATTTCGTGTGGATGGCGAATTGCGTCCGCAAGGGGAAAAACTCACCGAGAGTGATGTGGCTGCATTACTCGATAGCGCTA
TGGAACCAGATCGGCGTCAGGAATTTCGTAAAAGTCGCGAGTCGAATTTTGCCATTGTGAGAGATTGTGGTCGCTTCCGT
GTGAGTGCCTTTTTTCAACGCGAGTTACCAGGCGCAGTGATTCGTCGTATTGAAACCAATATTCCTACTTTTGAGCAGTT
AAAGTTACCGTTAGTGTTGCAAGATTTGGCGATAGCTAAGCGTGGTTTGGTGCTGGTGGTCGGTGCTACTGGATCGGGTA
AATCGACCACCATGGCGGCGATGACAGGCTATCGAAACAGCAATAAAACCGGGCACATTTTGACGGTCGAAGATCCGATC
GAATTCGTGCATGAACACAAGCGCTGTATCGTGACTCAACGCGAAGTTGGGTTAGATACGGAAAGCTATGAAGTTGCGCT
TAAAAACTCGCTGCGCCAAGCACCAGATATGATTTTGATTGGTGAGATCCGTAGCCGTGAAACAATGGAATACGCGATGA
CCTTCGCCGAAACGGGTCACCTGTGTATGGCAACGTTGCACGCCAACAATGCAAACCAAGCTTTAGAGCGCATTCTTCAC
TTGGTACCGAAAGATCAAAAAGAACAATTCTTGTTCGATTTGTCGATGAACCTAAAAGGCGTGGTTGGTCAGCAACTGAT
CCGAGATAAAAATGGGCAGGGACGTCATGGTGTATTTGAGATCTTGCTAAATAGCCCACGTGTGTCGGATTTGATTCGTC
GCGGAGATTTACATGAGTTGAAGTCAACCATGGCTCGCTCAAATGAGTTTGGTATGCTGACGTTCGATCAATCTCTTTAT
AAGTTAGTGATGCAAGGTAAGATCAGCGAAGAGGATGCACTACATAGTGCCGACTCGGCAAATGATCTGCGCTTGATGTT
GAAAACGCAGCGTGGTGAAGCATTCTCTACGAGCAGTTTGGCGAACGTTAAGATCGATATGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(111-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

82.065

100

0.821
  pilU Pseudomonas stutzeri DSM 10701

58.571

95.109

0.557
  pilU Acinetobacter baylyi ADP1

54.701

95.38

0.522
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.231

88.315

0.399
  pilT Legionella pneumophila strain ERS1305867

42.478

92.12

0.391
  pilT Legionella pneumophila strain Lp02

42.478

92.12

0.391
  pilT Acinetobacter nosocomialis M2

41.888

92.12

0.386
  pilT Acinetobacter baumannii D1279779

41.888

92.12

0.386
  pilT Acinetobacter baumannii strain A118

41.888

92.12

0.386
  pilT Pseudomonas aeruginosa PAK

41.888

92.12

0.386
  pilT Acinetobacter baylyi ADP1

41.692

89.946

0.375
  pilT Pseudomonas stutzeri DSM 10701

40.708

92.12

0.375
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.317

90.761

0.375
  pilT Vibrio cholerae strain A1552

41.317

90.761

0.375
  pilT Neisseria gonorrhoeae MS11

40.06

90.217

0.361
  pilT Neisseria meningitidis 8013

40.06

90.217

0.361

Multiple sequence alignment