Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WMO32_RS05935 Genome accession   NZ_CP150120
Coordinates   1284735..1285160 (+) Length   141 a.a.
NCBI ID   WP_341809532.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain TanzP11-2L     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1279735..1290160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMO32_RS05920 (WMO32_05920) coaE 1281630..1282238 (-) 609 WP_014504326.1 dephospho-CoA kinase -
  WMO32_RS05925 (WMO32_05925) - 1282252..1283115 (-) 864 WP_014504325.1 A24 family peptidase -
  WMO32_RS05930 (WMO32_05930) pilC 1283122..1284381 (-) 1260 WP_014504324.1 type II secretion system F family protein Machinery gene
  WMO32_RS05935 (WMO32_05935) pilA 1284735..1285160 (+) 426 WP_341809532.1 pilin Machinery gene
  WMO32_RS05940 (WMO32_05940) - 1285296..1286885 (+) 1590 WP_014504322.1 phosphoethanolamine transferase -
  WMO32_RS05945 (WMO32_05945) - 1286896..1287525 (+) 630 WP_024711608.1 hypothetical protein -
  WMO32_RS05950 (WMO32_05950) - 1287495..1289020 (+) 1526 Protein_1131 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14328.58 Da        Isoelectric Point: 9.0090

>NTDB_id=962905 WMO32_RS05935 WP_341809532.1 1284735..1285160(+) (pilA) [Xanthomonas oryzae pv. oryzicola strain TanzP11-2L]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVAETSSSLGGVANVTLANSGYVFPGATK
YVSAVTIASGTGKVTVTSTVPNAGGDIVLTPTDVGGGQLKWTCSSAIATKYLPAECRNSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=962905 WMO32_RS05935 WP_341809532.1 1284735..1285160(+) (pilA) [Xanthomonas oryzae pv. oryzicola strain TanzP11-2L]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCACCTGCCAAGCTTGCGGTAG
CGGAGACTTCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACGTATTCCCGGGTGCCACGAAG
TATGTCAGCGCCGTCACTATCGCCAGTGGCACGGGTAAAGTCACTGTGACCTCCACGGTGCCCAACGCTGGCGGTGACAT
CGTGCTGACCCCGACTGACGTCGGTGGTGGCCAGTTGAAGTGGACCTGCTCTTCCGCCATCGCCACCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

43.293

100

0.504
  pilA2 Legionella pneumophila str. Paris

52.206

96.454

0.504
  pilA2 Legionella pneumophila strain ERS1305867

51.471

96.454

0.496
  comP Acinetobacter baylyi ADP1

41.83

100

0.454
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.514

100

0.44
  pilE Neisseria gonorrhoeae strain FA1090

36.471

100

0.44
  pilA/pilA1 Eikenella corrodens VA1

40

100

0.426
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.418
  pilE Neisseria gonorrhoeae MS11

36.42

100

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.336

97.163

0.411
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.304

97.872

0.404
  pilA Vibrio parahaemolyticus RIMD 2210633

39.706

96.454

0.383
  pilA Acinetobacter baumannii strain A118

37.589

100

0.376
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

32.919

100

0.376
  pilA Vibrio cholerae strain A1552

32.919

100

0.376
  pilA Vibrio cholerae C6706

32.919

100

0.376