NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	WHO21_RS03360	Genome accession	NZ_CP148131
Coordinates	731624..732490 (-)	Length	288 a.a.
NCBI ID	WP_010951890.1	Uniprot ID	Q88Q64
Organism	Pseudomonas putida isolate FELIX_MS641
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 726624..737490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHO21_RS03325	-	727096..728391 (-)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-
WHO21_RS03330	-	728476..728649 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
WHO21_RS03335	-	728782..729411 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
WHO21_RS03340	-	729467..729898 (-)	432	WP_049588119.1	hypothetical protein	-
WHO21_RS03345	-	729985..730692 (+)	708	WP_049588121.1	energy-coupling factor ABC transporter permease	-
WHO21_RS03350	yacG	730804..731004 (-)	201	WP_010951889.1	DNA gyrase inhibitor YacG	-
WHO21_RS03355	coaE	731001..731624 (-)	624	WP_004575721.1	dephospho-CoA kinase	-
WHO21_RS03360	pilD	731624..732490 (-)	867	WP_010951890.1	A24 family peptidase	Machinery gene
WHO21_RS03365	-	732493..733701 (-)	1209	WP_010951891.1	type II secretion system F family protein	-
WHO21_RS03370	-	733918..734328 (+)	411	WP_010951892.1	pilin	-
WHO21_RS03380	ltrA	734975..736396 (+)	1422	WP_049587292.1	group II intron reverse transcriptase/maturase	-
WHO21_RS03385	-	736670..737410 (-)	741	WP_010951894.1	cold shock domain-containing protein	-

Sequence

Protein

Download Length: 288 a.a. Molecular weight: 31830.86 Da Isoelectric Point: 7.5986

                                >NTDB_id=951489 WHO21_RS03360 WP_010951890.1 731624..732490(-) (pilD) [Pseudomonas putida isolate FELIX_MS641]

MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRIRA

WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALVALPLTWCLLALSLIDADHQLLPDVLVL

PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA

LFGLCLLRFRRDAMGTAIPFGPYLAIAGWIAVLWGDEIYASYMQLLGY

Nucleotide

Download Length: 867 bp

                                >NTDB_id=951489 WHO21_RS03360 WP_010951890.1 731624..732490(-) (pilD) [Pseudomonas putida isolate FELIX_MS641]

ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG

CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC

TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG

TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA

CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGGTGG

CTCTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG

CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC

CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA

AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG

CTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC

GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q88Q64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	49.822	97.569	0.486
pilD	Acinetobacter nosocomialis M2	49.11	97.569	0.479
pilD	Vibrio campbellii strain DS40M4	48.913	95.833	0.469
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451

Detailed information NTG0951489