Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | WHF41_RS06345 | Genome accession | NZ_CP148032 |
| Coordinates | 1244400..1245476 (-) | Length | 358 a.a. |
| NCBI ID | WP_025205428.1 | Uniprot ID | - |
| Organism | MAG: Dehalobacter restrictus isolate SAD | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1239400..1250476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHF41_RS06260 (WHF41_06220) | - | 1240096..1241760 (+) | 1665 | WP_019226756.1 | ribonuclease J | - |
| WHF41_RS06335 (WHF41_06295) | - | 1243694..1243885 (+) | 192 | WP_019226757.1 | hypothetical protein | - |
| WHF41_RS06340 (WHF41_06300) | - | 1243872..1244222 (+) | 351 | WP_019226758.1 | hypothetical protein | - |
| WHF41_RS06345 (WHF41_06305) | pilT | 1244400..1245476 (-) | 1077 | WP_025205428.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| WHF41_RS06350 (WHF41_06310) | - | 1245512..1247191 (-) | 1680 | WP_019226760.1 | GspE/PulE family protein | - |
| WHF41_RS06355 (WHF41_06315) | - | 1247339..1248004 (+) | 666 | WP_019226761.1 | A24 family peptidase | - |
| WHF41_RS06360 (WHF41_06320) | - | 1248361..1249656 (-) | 1296 | WP_025205216.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 39706.13 Da Isoelectric Point: 6.3419
>NTDB_id=950116 WHF41_RS06345 WP_025205428.1 1244400..1245476(-) (pilT) [MAG: Dehalobacter restrictus isolate SAD]
MNLNIRDLLLMSLELKASDLHITTGLPPMFRINGILTPMANAKYLSPLDTKELVDELMDEPVKNRLQQKGEVDFSYTIPG
ISRFRVNVYSQRKSLAAAIRVIVPDIPSINELGLPDILKDLAMKPRGLILVTGPTGSGKSTTLAAMVRHMNTHRNSHVIT
IEDPIEYLHAHNQCMINQREIGDDTHAFADALRSALREDPDVILVGEMRDLETINTALMASETGHLVLSTLHTSSAATTI
DRIIDVFPPNQLQQIKVQLASVLQGIICQQLLPTMDGTGRVAAMEALIVNDAVRNMIREGKTHQIDTVIQTGIKAGMAPM
DYSLANLVKRKMVTLEEANLRCVNPELFSKYLDQPFIF
MNLNIRDLLLMSLELKASDLHITTGLPPMFRINGILTPMANAKYLSPLDTKELVDELMDEPVKNRLQQKGEVDFSYTIPG
ISRFRVNVYSQRKSLAAAIRVIVPDIPSINELGLPDILKDLAMKPRGLILVTGPTGSGKSTTLAAMVRHMNTHRNSHVIT
IEDPIEYLHAHNQCMINQREIGDDTHAFADALRSALREDPDVILVGEMRDLETINTALMASETGHLVLSTLHTSSAATTI
DRIIDVFPPNQLQQIKVQLASVLQGIICQQLLPTMDGTGRVAAMEALIVNDAVRNMIREGKTHQIDTVIQTGIKAGMAPM
DYSLANLVKRKMVTLEEANLRCVNPELFSKYLDQPFIF
Nucleotide
Download Length: 1077 bp
>NTDB_id=950116 WHF41_RS06345 WP_025205428.1 1244400..1245476(-) (pilT) [MAG: Dehalobacter restrictus isolate SAD]
ATGAATCTAAATATCAGGGACTTACTTTTAATGTCATTGGAACTTAAAGCTTCTGACCTCCACATCACAACCGGTCTTCC
CCCAATGTTCAGAATCAATGGTATCTTGACTCCGATGGCAAATGCCAAGTATTTGTCTCCGTTGGACACCAAAGAGCTTG
TTGATGAACTAATGGATGAACCCGTGAAAAACCGTTTGCAGCAAAAGGGAGAAGTTGACTTTTCCTATACGATCCCTGGT
ATCAGCCGTTTCAGGGTTAACGTCTACAGCCAGCGAAAAAGCCTGGCGGCCGCGATCAGGGTCATTGTTCCGGATATTCC
AAGTATTAACGAGCTGGGACTGCCTGATATCCTGAAAGACCTCGCAATGAAACCCAGAGGTCTGATCCTGGTCACGGGTC
CGACCGGTTCCGGTAAATCCACTACCCTTGCTGCCATGGTGCGCCATATGAATACGCACCGCAACAGTCACGTCATTACC
ATCGAAGACCCGATCGAATATTTGCATGCCCATAATCAATGTATGATAAACCAGCGTGAGATTGGTGACGATACCCATGC
CTTTGCAGATGCTTTACGGTCTGCACTGCGTGAAGACCCCGATGTTATCTTGGTCGGTGAAATGCGCGACCTTGAGACGA
TCAACACGGCCCTGATGGCTTCAGAAACAGGCCACTTGGTCTTGTCCACCCTCCATACTTCATCCGCAGCGACTACCATT
GACCGGATCATCGATGTTTTTCCGCCGAATCAACTGCAGCAAATTAAAGTTCAGTTGGCATCTGTTCTTCAGGGCATTAT
CTGCCAGCAGCTGCTGCCTACTATGGATGGTACCGGACGTGTTGCAGCGATGGAAGCTCTCATCGTCAATGACGCTGTCC
GGAATATGATCCGTGAAGGCAAGACCCACCAGATTGATACGGTCATCCAGACTGGCATCAAAGCGGGTATGGCCCCGATG
GATTATTCTCTGGCGAATCTGGTTAAGCGGAAGATGGTAACCCTTGAGGAAGCTAACTTAAGATGCGTGAATCCTGAGTT
GTTCTCGAAGTATCTTGATCAGCCGTTTATATTCTAA
ATGAATCTAAATATCAGGGACTTACTTTTAATGTCATTGGAACTTAAAGCTTCTGACCTCCACATCACAACCGGTCTTCC
CCCAATGTTCAGAATCAATGGTATCTTGACTCCGATGGCAAATGCCAAGTATTTGTCTCCGTTGGACACCAAAGAGCTTG
TTGATGAACTAATGGATGAACCCGTGAAAAACCGTTTGCAGCAAAAGGGAGAAGTTGACTTTTCCTATACGATCCCTGGT
ATCAGCCGTTTCAGGGTTAACGTCTACAGCCAGCGAAAAAGCCTGGCGGCCGCGATCAGGGTCATTGTTCCGGATATTCC
AAGTATTAACGAGCTGGGACTGCCTGATATCCTGAAAGACCTCGCAATGAAACCCAGAGGTCTGATCCTGGTCACGGGTC
CGACCGGTTCCGGTAAATCCACTACCCTTGCTGCCATGGTGCGCCATATGAATACGCACCGCAACAGTCACGTCATTACC
ATCGAAGACCCGATCGAATATTTGCATGCCCATAATCAATGTATGATAAACCAGCGTGAGATTGGTGACGATACCCATGC
CTTTGCAGATGCTTTACGGTCTGCACTGCGTGAAGACCCCGATGTTATCTTGGTCGGTGAAATGCGCGACCTTGAGACGA
TCAACACGGCCCTGATGGCTTCAGAAACAGGCCACTTGGTCTTGTCCACCCTCCATACTTCATCCGCAGCGACTACCATT
GACCGGATCATCGATGTTTTTCCGCCGAATCAACTGCAGCAAATTAAAGTTCAGTTGGCATCTGTTCTTCAGGGCATTAT
CTGCCAGCAGCTGCTGCCTACTATGGATGGTACCGGACGTGTTGCAGCGATGGAAGCTCTCATCGTCAATGACGCTGTCC
GGAATATGATCCGTGAAGGCAAGACCCACCAGATTGATACGGTCATCCAGACTGGCATCAAAGCGGGTATGGCCCCGATG
GATTATTCTCTGGCGAATCTGGTTAAGCGGAAGATGGTAACCCTTGAGGAAGCTAACTTAAGATGCGTGAATCCTGAGTT
GTTCTCGAAGTATCTTGATCAGCCGTTTATATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.432 |
98.324 |
0.486 |
| pilT | Neisseria meningitidis 8013 |
49.28 |
96.927 |
0.478 |
| pilT | Neisseria gonorrhoeae MS11 |
48.991 |
96.927 |
0.475 |
| pilT | Acinetobacter baumannii strain A118 |
48.844 |
96.648 |
0.472 |
| pilT | Acinetobacter baylyi ADP1 |
48.844 |
96.648 |
0.472 |
| pilT | Acinetobacter baumannii D1279779 |
48.844 |
96.648 |
0.472 |
| pilT | Acinetobacter nosocomialis M2 |
48.844 |
96.648 |
0.472 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.254 |
93.575 |
0.461 |
| pilT | Vibrio cholerae strain A1552 |
49.254 |
93.575 |
0.461 |
| pilT | Pseudomonas aeruginosa PAK |
46.991 |
97.486 |
0.458 |
| pilT | Legionella pneumophila strain Lp02 |
46.705 |
97.486 |
0.455 |
| pilT | Legionella pneumophila strain ERS1305867 |
46.705 |
97.486 |
0.455 |
| pilT | Pseudomonas stutzeri DSM 10701 |
45.845 |
97.486 |
0.447 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.667 |
93.855 |
0.391 |
| pilU | Acinetobacter baylyi ADP1 |
40.95 |
94.134 |
0.385 |
| pilU | Vibrio cholerae strain A1552 |
39.938 |
90.223 |
0.36 |