Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACHWYH_RS01365 Genome accession   NZ_CP172084
Coordinates   276329..277705 (+) Length   458 a.a.
NCBI ID   WP_032824065.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 271329..282705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS01335 - 271482..272162 (-) 681 WP_005647270.1 TIGR00153 family protein -
  ACHWYH_RS01340 - 272385..272825 (+) 441 WP_005653243.1 DoxX family protein -
  ACHWYH_RS01345 - 272864..273151 (+) 288 WP_005647268.1 hypothetical protein -
  ACHWYH_RS01350 - 273211..274134 (+) 924 WP_162628586.1 DUF692 domain-containing protein -
  ACHWYH_RS01355 - 274124..274840 (+) 717 WP_032824067.1 DUF2063 domain-containing protein -
  ACHWYH_RS01360 - 275160..276206 (+) 1047 WP_032824066.1 CYTH domain-containing protein -
  ACHWYH_RS01365 radA/sms 276329..277705 (+) 1377 WP_032824065.1 DNA repair protein RadA Machinery gene
  ACHWYH_RS01370 lrp 277785..278264 (+) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -
  ACHWYH_RS01375 - 278266..281034 (+) 2769 WP_112103547.1 DNA translocase FtsK -
  ACHWYH_RS01380 lolA 281052..281669 (+) 618 WP_005661471.1 outer membrane lipoprotein chaperone LolA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49450.02 Da        Isoelectric Point: 7.8916

>NTDB_id=949897 ACHWYH_RS01365 WP_032824065.1 276329..277705(+) (radA/sms) [Haemophilus influenzae strain GA81666]
MAKAPKTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRLISTAKSKNDRFSGYAGEIQAKIQTLSEISLQETPRFSSGFN
ELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAKNMTALYVTGEESLQQVAMRASRLGLSNDQLKMLSETSVEQI
CNLADQLKPQIIVVDSIQVMHLADIQSSPGSVAQVRECASFLTRYAKTRQIAIIMVGHVTKDGTLAGPKVLEHAIDCSLL
LEGEADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMADQDVFVNVVGGVKVSETSADLALLLALISSFRNYPLPQDLVIFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIVPFGNKPKSAVENMQVFTVKKLTDALAVLDNL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=949897 ACHWYH_RS01365 WP_032824065.1 276329..277705(+) (radA/sms) [Haemophilus influenzae strain GA81666]
ATGGCTAAAGCCCCGAAAACAGCTTATGTATGTAACGATTGTGGTGCAGAGTTTTCTCGTTGGCAAGGGCAATGTTCGGC
TTGTAAAGCGTGGAATACAATCACGGAAGTGCGGTTAATTTCCACGGCAAAATCAAAAAATGATCGTTTTAGTGGCTATG
CGGGGGAAATTCAGGCAAAAATTCAAACCCTTTCTGAAATTAGTCTGCAAGAAACACCACGTTTTTCCAGTGGCTTTAAT
GAATTAGATCGTGTGCTGGGCGGTGGAGTTGTACCGGGCAGTGCGATTTTAATTGGTGGGCATCCTGGTGCAGGGAAAAG
TACATTGTTATTACAGGTCATGTGTGGTTTAGCGAAAAATATGACCGCACTTTATGTGACGGGAGAGGAATCGTTACAAC
AGGTTGCGATGCGTGCAAGTCGATTGGGATTGTCAAACGATCAATTAAAAATGTTGTCAGAAACCTCTGTGGAACAGATT
TGTAATTTGGCGGATCAGTTAAAACCGCAAATTATCGTGGTGGATTCCATCCAAGTAATGCATCTGGCGGATATTCAATC
ATCGCCAGGCAGTGTGGCACAAGTGCGTGAATGTGCTTCTTTCCTCACTCGTTATGCGAAAACCCGCCAAATTGCCATTA
TTATGGTGGGGCATGTAACGAAAGACGGTACCCTTGCAGGGCCGAAAGTGTTAGAGCATGCTATTGATTGTTCATTACTA
TTAGAAGGCGAGGCCGATTCTCGCTATCGTACTTTGCGTAGCCATAAAAACCGTTTTGGTGCGGTGAATGAATTAGGCGT
ATTTGGTATGACTGAACAAGGTTTGCGAGAAGTGAAAAACCCATCGGCGATCTTTTTAAGTCGTGGGGATGAGATTACAT
CGGGCAGTTCCGTGATGGTGCTTTGGGAAGGCACCCGCCCTCTTTTAGTTGAAATTCAAGCTTTAGTAGATCATTCAATG
TTGGCGAATCCTCGCCGTGTTGCGGTGGGATTAGAGCAAAATCGTTTGTCGTTGTTATTGGCGGTTTTACATAGACACGG
AGGTTTGCAAATGGCGGATCAAGATGTCTTTGTAAATGTCGTTGGTGGTGTAAAAGTTAGTGAAACAAGTGCGGATTTAG
CCTTATTGCTTGCGTTAATTTCTAGTTTCCGTAATTACCCTTTGCCGCAAGATTTAGTGATTTTTGGCGAAGTTGGATTA
GCGGGAGAAATTCGTCCTGTGCCAAGTGGACAGGAACGTATTAGCGAGGCTGCAAAACACGGCTTTAAACGTGCTATTGT
TCCTTTCGGCAATAAACCGAAAAGTGCGGTCGAAAATATGCAAGTTTTTACTGTGAAAAAACTCACGGATGCGCTCGCTG
TGTTAGATAATTTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.277

100

0.474
  radA Streptococcus mitis NCTC 12261

43.929

98.908

0.434
  radA Streptococcus mitis SK321

43.929

98.908

0.434
  radA Streptococcus pneumoniae TIGR4

45.455

93.668

0.426
  radA Streptococcus pneumoniae D39

45.455

93.668

0.426
  radA Streptococcus pneumoniae Rx1

45.455

93.668

0.426
  radA Streptococcus pneumoniae R6

45.455

93.668

0.426