Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   WCX87_RS06470 Genome accession   NZ_CP147917
Coordinates   1291755..1292834 (+) Length   359 a.a.
NCBI ID   WP_345978613.1    Uniprot ID   -
Organism   Sulfurimonas sp. HSL3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1286755..1297834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCX87_RS06440 (WCX87_06440) - 1287306..1288574 (+) 1269 WP_345978600.1 metallophosphoesterase -
  WCX87_RS06445 (WCX87_06445) - 1288577..1289392 (-) 816 WP_345978602.1 tyrosine-type recombinase/integrase -
  WCX87_RS06450 (WCX87_06450) - 1289392..1290396 (-) 1005 WP_345978604.1 hypothetical protein -
  WCX87_RS06455 (WCX87_06455) - 1290400..1290996 (-) 597 WP_345978606.1 hypothetical protein -
  WCX87_RS06460 (WCX87_06460) gatC 1291121..1291411 (+) 291 WP_345978608.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  WCX87_RS06465 (WCX87_06465) - 1291417..1291758 (+) 342 WP_345978612.1 arsenate reductase family protein -
  WCX87_RS06470 (WCX87_06470) pilT 1291755..1292834 (+) 1080 WP_345978613.1 type IV pilus twitching motility protein PilT Machinery gene
  WCX87_RS06475 (WCX87_06475) - 1292924..1294273 (-) 1350 WP_345978615.1 3-deoxy-7-phosphoheptulonate synthase class II -
  WCX87_RS06480 (WCX87_06480) - 1294489..1295415 (+) 927 WP_345978617.1 GGDEF domain-containing protein -
  WCX87_RS06485 (WCX87_06485) - 1295405..1296097 (+) 693 WP_345978619.1 CvpA family protein -
  WCX87_RS06490 (WCX87_06490) - 1296101..1296568 (+) 468 WP_345978620.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 40010.17 Da        Isoelectric Point: 6.8490

>NTDB_id=949716 WCX87_RS06470 WP_345978613.1 1291755..1292834(+) (pilT) [Sulfurimonas sp. HSL3-2]
MSQEVQKLDIKKLLKSVVAYKASDLHLVANSEPQIRRDGRLVALNLPVLDGDMITEMAYALLSEKQKKDFEEFNELDFAI
MIPDVGRFRSNYYRTMGDIACAFRIIPTDIPSLDDLNAKKIFKELVKREKGLILVTGPTGSGKSTTLAAMLNEINETEKK
HVITVEDPVEFVHKNKKCLFSQRNVGTDTNGFHTALKYALRQDPDVILIGEMRDKETIGAALTAAETGHLVFGTLHTNSA
PQTINRIIDVFGGDEQPQIRAQLSTSLIAVISQALIPRIGGGRIAAQELLVVNPAIANLIREDKVHQLYSQMQLNQQGTN
MTTQTQEIIDFLRKKIISKENAIGFSNRPEELIKMIDGL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=949716 WCX87_RS06470 WP_345978613.1 1291755..1292834(+) (pilT) [Sulfurimonas sp. HSL3-2]
ATGAGTCAAGAAGTTCAAAAACTAGACATAAAAAAACTTTTAAAAAGTGTTGTTGCCTATAAGGCTTCCGATCTACACCT
TGTTGCGAATTCTGAGCCTCAAATACGTAGGGATGGAAGGCTTGTAGCTCTTAACCTGCCTGTTTTAGACGGAGATATGA
TCACGGAGATGGCATATGCCCTGCTCTCTGAAAAGCAAAAGAAAGACTTTGAAGAGTTTAATGAGCTTGACTTTGCGATC
ATGATTCCGGATGTCGGACGTTTTCGTTCCAACTACTATAGAACGATGGGTGACATCGCTTGTGCCTTTCGTATAATCCC
GACGGATATCCCTTCACTTGACGACTTGAATGCTAAAAAGATCTTTAAAGAACTGGTAAAACGCGAAAAAGGTCTTATCT
TAGTAACAGGTCCTACTGGTAGCGGTAAATCGACTACTCTTGCAGCGATGCTCAATGAGATCAACGAAACTGAGAAAAAA
CACGTTATCACTGTCGAAGATCCGGTCGAGTTCGTCCATAAGAACAAAAAATGTCTCTTCTCACAAAGAAATGTCGGAAC
CGATACAAACGGTTTCCATACGGCGCTCAAATACGCACTTCGTCAAGATCCTGACGTTATTCTGATCGGGGAGATGCGTG
ATAAAGAGACTATCGGTGCTGCGCTAACTGCGGCAGAAACAGGTCACTTGGTCTTTGGAACACTGCACACCAACTCTGCT
CCACAGACTATCAACCGTATTATCGACGTTTTCGGTGGAGATGAACAGCCGCAGATCCGTGCACAGCTCTCGACTTCACT
GATCGCCGTCATATCCCAAGCGCTTATTCCTCGTATCGGTGGCGGCCGTATTGCAGCGCAAGAGCTTCTAGTCGTTAATC
CTGCAATCGCGAACCTTATCCGTGAAGATAAAGTTCACCAGCTTTACTCTCAAATGCAGCTAAACCAACAGGGAACGAAT
ATGACTACGCAGACTCAGGAGATCATAGATTTCCTAAGAAAGAAAATCATCTCCAAAGAGAATGCTATCGGATTCTCAAA
TCGTCCTGAAGAGCTCATAAAAATGATAGACGGACTGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

50.862

96.936

0.493
  pilT Acinetobacter baumannii strain A118

50.862

96.936

0.493
  pilT Acinetobacter nosocomialis M2

50.862

96.936

0.493
  pilT Pseudomonas aeruginosa PAK

51.014

96.1

0.49
  pilT Acinetobacter baylyi ADP1

51.014

96.1

0.49
  pilT Pseudomonas stutzeri DSM 10701

49.856

96.657

0.482
  pilT Legionella pneumophila strain ERS1305867

51.343

93.315

0.479
  pilT Legionella pneumophila strain Lp02

51.343

93.315

0.479
  pilT Vibrio cholerae strain A1552

52.5

89.136

0.468
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

52.5

89.136

0.468
  pilT Neisseria gonorrhoeae MS11

48.214

93.593

0.451
  pilT Neisseria meningitidis 8013

47.917

93.593

0.448
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.875

97.772

0.429
  pilU Acinetobacter baylyi ADP1

41.21

96.657

0.398
  pilU Pseudomonas stutzeri DSM 10701

38.068

98.05

0.373
  pilU Vibrio cholerae strain A1552

36.932

98.05

0.362