Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   V6U65_RS09280 Genome accession   NZ_CP145863
Coordinates   2006410..2007366 (-) Length   318 a.a.
NCBI ID   WP_002885753.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2001410..2012366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS09250 (V6U65_09245) proC 2001944..2002714 (+) 771 WP_002885846.1 pyrroline-5-carboxylate reductase -
  V6U65_RS09255 (V6U65_09250) - 2002745..2003407 (-) 663 WP_021144681.1 CPBP family intramembrane glutamic endopeptidase -
  V6U65_RS09260 (V6U65_09255) - 2003520..2003966 (-) 447 WP_021144682.1 hypothetical protein -
  V6U65_RS09265 (V6U65_09260) - 2004044..2004700 (-) 657 WP_410532390.1 CPBP family intramembrane glutamic endopeptidase -
  V6U65_RS09270 (V6U65_09265) - 2004712..2004909 (-) 198 WP_014635114.1 helix-turn-helix transcriptional regulator -
  V6U65_RS09275 (V6U65_09270) - 2005160..2006353 (-) 1194 WP_014635115.1 acetate kinase -
  V6U65_RS09280 (V6U65_09275) comYH 2006410..2007366 (-) 957 WP_002885753.1 class I SAM-dependent methyltransferase Machinery gene
  V6U65_RS09285 (V6U65_09280) comGG 2007411..2007728 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG -
  V6U65_RS09290 (V6U65_09285) comYF 2007706..2008143 (-) 438 WP_021144684.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U65_RS09295 (V6U65_09290) comGE 2008130..2008360 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE -
  V6U65_RS09300 (V6U65_09295) comYD 2008392..2008820 (-) 429 WP_254593949.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U65_RS09305 (V6U65_09300) comYC 2008780..2009094 (-) 315 WP_170314557.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U65_RS09310 (V6U65_09305) comYB 2009103..2010203 (-) 1101 WP_410533115.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U65_RS09315 (V6U65_09310) comYA 2010085..2011026 (-) 942 WP_410532391.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U65_RS09320 (V6U65_09315) - 2011106..2011468 (-) 363 WP_002885749.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35775.66 Da        Isoelectric Point: 4.3482

>NTDB_id=940536 V6U65_RS09280 WP_002885753.1 2006410..2007366(-) (comYH) [Streptococcus salivarius strain KSS6]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=940536 V6U65_RS09280 WP_002885753.1 2006410..2007366(-) (comYH) [Streptococcus salivarius strain KSS6]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCGCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATTAAACTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCGGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGCATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGATCTACCTGTTGG
TTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACCGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTTGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698