Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V6U64_RS07950 Genome accession   NZ_CP145862
Coordinates   1741720..1743525 (-) Length   601 a.a.
NCBI ID   WP_037599540.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736720..1748525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS07925 (V6U64_07925) - 1737479..1737964 (-) 486 WP_064520603.1 LURP-one-related/scramblase family protein -
  V6U64_RS07930 (V6U64_07930) - 1738097..1738234 (-) 138 WP_153300621.1 hypothetical protein -
  V6U64_RS07935 (V6U64_07935) - 1738303..1739445 (-) 1143 WP_155213909.1 peptidyl-prolyl cis-trans isomerase -
  V6U64_RS07940 (V6U64_07940) - 1739507..1740214 (-) 708 WP_014633986.1 O-methyltransferase -
  V6U64_RS07945 (V6U64_07945) - 1740286..1741506 (-) 1221 WP_064523785.1 OFA family MFS transporter -
  V6U64_RS07950 (V6U64_07950) pepF 1741720..1743525 (-) 1806 WP_037599540.1 oligoendopeptidase F Regulator
  V6U64_RS07955 (V6U64_07955) - 1743536..1744495 (-) 960 WP_048790170.1 competence protein CoiA -
  V6U64_RS07960 (V6U64_07960) - 1745801..1747738 (-) 1938 WP_038675412.1 GbpC/Spa domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69040.08 Da        Isoelectric Point: 4.5615

>NTDB_id=940460 V6U64_RS07950 WP_037599540.1 1741720..1743525(-) (pepF) [Streptococcus salivarius strain KSS4]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAEFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSARHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=940460 V6U64_RS07950 WP_037599540.1 1741720..1743525(-) (pepF) [Streptococcus salivarius strain KSS4]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTCTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACAGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
ATACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGAGTTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGCCTTTTGGCAAACAAGGACCACGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCAGCAGCA
GGTGATATCTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACCTACGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAGCACGTCATGCAGCACTTGCAGCTAACTTTATTCCAGAAAGTGTTTA
TGATTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCATCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGGC
TTGACGAGCTTAAGATGTATGATGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCCTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGAAAACGTTCAGGTGCTTACTCAGGTGGTGCCTATGATACCAATGCTTTCATGCTTTTGAACT
GGCAAGATACTTTGGACAATCTCTTTACCTTGGTTCACGAGACTGGTCATAGTTTGCATTCAACGTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCGGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTCAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCAGAGTTTGAACATGCTATCCATGAAGCAGATGCATCTGGTCAAATCTTGACAGCCGACTTC
ATGAATAAGCTTTACGCAGATCTCAATGAGAAATACTATAATCTCAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTTTACATGAATTACTATGTCTACCAATACGCTACAGGGTTTGCGGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCATGGTACTGAAGAAGATAAGGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGACTATCCTTTG
GAAGTCATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
TGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTGCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.667

100

0.997