Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | VZG88_RS06500 | Genome accession | NZ_CP143871 |
| Coordinates | 1325314..1326402 (-) | Length | 362 a.a. |
| NCBI ID | WP_208678881.1 | Uniprot ID | A0AAT9K0X3 |
| Organism | Synechococcus elongatus IITB6 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1320314..1331402
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VZG88_RS06480 (VZG88_06480) | dusA | 1321244..1322257 (-) | 1014 | WP_208679095.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| VZG88_RS06485 (VZG88_06485) | - | 1322284..1323516 (+) | 1233 | WP_208678884.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| VZG88_RS06490 (VZG88_06490) | - | 1323496..1324053 (-) | 558 | WP_208678883.1 | hypothetical protein | - |
| VZG88_RS06495 (VZG88_06495) | - | 1324058..1325290 (-) | 1233 | WP_208678882.1 | type II secretion system F family protein | - |
| VZG88_RS06500 (VZG88_06500) | pilT | 1325314..1326402 (-) | 1089 | WP_208678881.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| VZG88_RS06505 (VZG88_06505) | pilB/pilB1 | 1326474..1328474 (-) | 2001 | WP_208678880.1 | GspE/PulE family protein | Machinery gene |
| VZG88_RS06510 (VZG88_06510) | grpE | 1328751..1329374 (+) | 624 | WP_338438663.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 362 a.a. Molecular weight: 39840.95 Da Isoelectric Point: 6.3643
>NTDB_id=931630 VZG88_RS06500 WP_208678881.1 1325314..1326402(-) (pilT) [Synechococcus elongatus IITB6]
MELMIEDLMEKLVEMGGSDLHLSVGLPPYFRISGKLTPIGDEPMGEEQCQRLIFSMLNNTQRKMLEQNWELDCSYGIRGL
ARFRVNVYKDKGTYAACLRALSAKVPEFNDLGLPQVVREMSEKPRGLILVTGPTGSGKTTTLAAIIELINRSRAEHIITV
EDPIEFVYQPAKSIIHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETIQLAITAAETGHLVFGTLHTSSAAQTVD
RIIDVFPAEKQTQVRVQLSNSLVAVFSQTLVPKRSARPGSFGRVLAQEIMIVTPAVSNLIREGKTAQIYSQIQTGGKLGM
QTLEKALADLYKAGEITFEAAASKTSRPDEMQRLIGNVSIAA
MELMIEDLMEKLVEMGGSDLHLSVGLPPYFRISGKLTPIGDEPMGEEQCQRLIFSMLNNTQRKMLEQNWELDCSYGIRGL
ARFRVNVYKDKGTYAACLRALSAKVPEFNDLGLPQVVREMSEKPRGLILVTGPTGSGKTTTLAAIIELINRSRAEHIITV
EDPIEFVYQPAKSIIHQRQLGEDTKSFANALRAALREDPDIILVGEMRDLETIQLAITAAETGHLVFGTLHTSSAAQTVD
RIIDVFPAEKQTQVRVQLSNSLVAVFSQTLVPKRSARPGSFGRVLAQEIMIVTPAVSNLIREGKTAQIYSQIQTGGKLGM
QTLEKALADLYKAGEITFEAAASKTSRPDEMQRLIGNVSIAA
Nucleotide
Download Length: 1089 bp
>NTDB_id=931630 VZG88_RS06500 WP_208678881.1 1325314..1326402(-) (pilT) [Synechococcus elongatus IITB6]
ATGGAACTAATGATCGAAGACCTGATGGAAAAGCTCGTGGAGATGGGAGGATCTGACCTCCATCTTTCTGTTGGCTTACC
TCCTTATTTTCGAATCAGTGGAAAACTTACCCCCATCGGGGATGAACCAATGGGTGAGGAACAGTGTCAGCGCTTGATCT
TCAGTATGTTGAACAACACGCAACGCAAAATGCTGGAGCAAAATTGGGAGCTTGATTGTTCCTATGGGATTCGTGGACTC
GCTCGTTTCCGGGTCAATGTTTACAAAGATAAAGGAACCTATGCCGCTTGCTTACGGGCTTTGAGTGCCAAGGTGCCGGA
GTTTAACGACCTAGGGCTACCTCAAGTGGTGCGCGAGATGAGCGAAAAACCAAGGGGGCTCATTCTCGTCACTGGCCCTA
CAGGGTCTGGGAAAACAACAACGTTGGCAGCCATTATTGAGTTAATTAACCGCAGTCGAGCTGAACATATCATTACGGTT
GAAGATCCCATTGAGTTTGTCTATCAACCCGCAAAAAGCATCATTCACCAGCGACAGCTTGGAGAAGATACGAAGAGTTT
TGCTAATGCCCTGCGAGCAGCGCTTCGAGAAGATCCTGACATCATTCTTGTGGGTGAGATGCGGGACTTAGAAACGATTC
AGTTAGCTATTACTGCTGCAGAAACTGGTCACCTTGTTTTTGGTACTTTGCACACCAGCTCCGCTGCTCAAACCGTTGAC
CGGATTATCGATGTCTTTCCTGCTGAAAAACAGACGCAGGTAAGGGTTCAGTTGTCGAATTCACTAGTTGCGGTCTTCAG
TCAAACCCTTGTCCCCAAACGCAGCGCTCGACCTGGTAGCTTTGGTCGTGTCCTTGCCCAAGAGATCATGATTGTTACAC
CAGCAGTTTCCAACTTAATTCGCGAAGGAAAAACCGCACAAATTTACTCTCAAATTCAGACGGGCGGAAAACTAGGCATG
CAGACCCTAGAGAAAGCTTTGGCTGATCTTTATAAGGCAGGTGAAATCACTTTTGAAGCAGCTGCCTCTAAAACATCTAG
GCCCGATGAGATGCAACGGTTGATTGGCAATGTTTCAATTGCTGCCTAG
ATGGAACTAATGATCGAAGACCTGATGGAAAAGCTCGTGGAGATGGGAGGATCTGACCTCCATCTTTCTGTTGGCTTACC
TCCTTATTTTCGAATCAGTGGAAAACTTACCCCCATCGGGGATGAACCAATGGGTGAGGAACAGTGTCAGCGCTTGATCT
TCAGTATGTTGAACAACACGCAACGCAAAATGCTGGAGCAAAATTGGGAGCTTGATTGTTCCTATGGGATTCGTGGACTC
GCTCGTTTCCGGGTCAATGTTTACAAAGATAAAGGAACCTATGCCGCTTGCTTACGGGCTTTGAGTGCCAAGGTGCCGGA
GTTTAACGACCTAGGGCTACCTCAAGTGGTGCGCGAGATGAGCGAAAAACCAAGGGGGCTCATTCTCGTCACTGGCCCTA
CAGGGTCTGGGAAAACAACAACGTTGGCAGCCATTATTGAGTTAATTAACCGCAGTCGAGCTGAACATATCATTACGGTT
GAAGATCCCATTGAGTTTGTCTATCAACCCGCAAAAAGCATCATTCACCAGCGACAGCTTGGAGAAGATACGAAGAGTTT
TGCTAATGCCCTGCGAGCAGCGCTTCGAGAAGATCCTGACATCATTCTTGTGGGTGAGATGCGGGACTTAGAAACGATTC
AGTTAGCTATTACTGCTGCAGAAACTGGTCACCTTGTTTTTGGTACTTTGCACACCAGCTCCGCTGCTCAAACCGTTGAC
CGGATTATCGATGTCTTTCCTGCTGAAAAACAGACGCAGGTAAGGGTTCAGTTGTCGAATTCACTAGTTGCGGTCTTCAG
TCAAACCCTTGTCCCCAAACGCAGCGCTCGACCTGGTAGCTTTGGTCGTGTCCTTGCCCAAGAGATCATGATTGTTACAC
CAGCAGTTTCCAACTTAATTCGCGAAGGAAAAACCGCACAAATTTACTCTCAAATTCAGACGGGCGGAAAACTAGGCATG
CAGACCCTAGAGAAAGCTTTGGCTGATCTTTATAAGGCAGGTGAAATCACTTTTGAAGCAGCTGCCTCTAAAACATCTAG
GCCCGATGAGATGCAACGGTTGATTGGCAATGTTTCAATTGCTGCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
53.026 |
95.856 |
0.508 |
| pilT | Pseudomonas aeruginosa PAK |
52.738 |
95.856 |
0.506 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.043 |
95.304 |
0.506 |
| pilT | Acinetobacter baylyi ADP1 |
53.043 |
95.304 |
0.506 |
| pilT | Legionella pneumophila strain Lp02 |
53.043 |
95.304 |
0.506 |
| pilT | Acinetobacter baumannii strain A118 |
52.174 |
95.304 |
0.497 |
| pilT | Acinetobacter baumannii D1279779 |
52.174 |
95.304 |
0.497 |
| pilT | Acinetobacter nosocomialis M2 |
52.174 |
95.304 |
0.497 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.296 |
98.066 |
0.483 |
| pilT | Neisseria meningitidis 8013 |
50.143 |
96.409 |
0.483 |
| pilT | Neisseria gonorrhoeae MS11 |
50.143 |
96.409 |
0.483 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.118 |
93.923 |
0.461 |
| pilT | Vibrio cholerae strain A1552 |
49.118 |
93.923 |
0.461 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.886 |
96.961 |
0.387 |
| pilU | Acinetobacter baylyi ADP1 |
37.536 |
96.409 |
0.362 |