Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   VZG88_RS06505 Genome accession   NZ_CP143871
Coordinates   1326474..1328474 (-) Length   666 a.a.
NCBI ID   WP_208678880.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1321474..1333474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS06485 (VZG88_06485) - 1322284..1323516 (+) 1233 WP_208678884.1 NAD(P)/FAD-dependent oxidoreductase -
  VZG88_RS06490 (VZG88_06490) - 1323496..1324053 (-) 558 WP_208678883.1 hypothetical protein -
  VZG88_RS06495 (VZG88_06495) - 1324058..1325290 (-) 1233 WP_208678882.1 type II secretion system F family protein -
  VZG88_RS06500 (VZG88_06500) pilT 1325314..1326402 (-) 1089 WP_208678881.1 type IV pilus twitching motility protein PilT Machinery gene
  VZG88_RS06505 (VZG88_06505) pilB/pilB1 1326474..1328474 (-) 2001 WP_208678880.1 GspE/PulE family protein Machinery gene
  VZG88_RS06510 (VZG88_06510) grpE 1328751..1329374 (+) 624 WP_338438663.1 nucleotide exchange factor GrpE -
  VZG88_RS06515 (VZG88_06515) dnaK 1329480..1331447 (+) 1968 WP_338438664.1 molecular chaperone DnaK -
  VZG88_RS06520 (VZG88_06520) dnaJ 1331593..1332723 (+) 1131 WP_208678879.1 molecular chaperone DnaJ -
  VZG88_RS06525 (VZG88_06525) - 1332720..1332971 (+) 252 WP_208676336.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 74261.89 Da        Isoelectric Point: 5.0802

>NTDB_id=931631 VZG88_RS06505 WP_208678880.1 1326474..1328474(-) (pilB/pilB1) [Synechococcus elongatus IITB6]
MPDQPISPRHALIALNQFSSFGNKLVQAGYVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQFRRQQLFELKI
LHGVESLNPEQSQYSEEVIHELIADLVPIETCRRHQLLPLERHEAPPRAVIAMVDPNNLDALDELNRLLRPRGYALQRLV
ITLEDYERLVAGYLDQQVERQQAAQAQQLGDFSEELANLESFDLTEISEQEEDLAKALQEADDAPIVSLANKILLKALTE
GASDIHVEPQEEGLRVRLRRDGVLHQEFGMLPKKIQAALISRLKIMANLDIAERRVPQDGRIRRMFQGRKIDFRVNSLPS
HFGEKICMRLLDNSATQLGLDQLITDPDALALVRDMGSRPYGLILVTGPTGSGKSTSLYSLLAERNDPAININTAEDPIE
YTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETRDLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVE
PYLVSGSLIGVVSQRLMRRVCPDCRIPYTPSPEELGRYGLSASQELDVTFYKARTLMADELAQARSQGQVCRTCRGTGYK
GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDRVTFTDSGVEAELKAKRKIGL
TCHTCGAGLQPEWLDCPYCLTPRFGN

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=931631 VZG88_RS06505 WP_208678880.1 1326474..1328474(-) (pilB/pilB1) [Synechococcus elongatus IITB6]
ATGCCAGACCAACCGATTTCCCCCCGCCACGCTCTGATTGCACTCAATCAGTTCTCATCGTTTGGTAACAAGCTGGTCCA
AGCAGGCTACGTCGACCCAGAGCAACTGCAGACAGCTTTAGTGGAAAGTCGGCGAAGTGGCCAGTCTCTGCCGCAAGTCA
TTTCAGCGCTGACTGGTCAGTCCTTACCGCCAGAACTGATGCAGCAGTTCCGCCGGCAGCAGTTATTCGAGCTTAAGATT
CTGCATGGCGTTGAATCTCTGAATCCTGAACAAAGTCAGTATTCTGAAGAGGTAATTCATGAGCTGATTGCAGATCTCGT
CCCAATCGAAACCTGCCGTCGACACCAGCTCTTGCCCTTGGAGCGACATGAGGCTCCCCCACGGGCGGTAATCGCCATGG
TGGACCCTAATAACCTTGATGCACTGGATGAACTTAATCGCCTGTTGCGCCCCAGAGGCTACGCGCTGCAGCGGTTGGTG
ATCACACTGGAAGACTACGAACGACTCGTTGCGGGCTATCTCGATCAACAAGTAGAGCGTCAGCAGGCTGCCCAAGCCCA
GCAGTTGGGCGATTTTTCCGAAGAACTCGCCAATCTGGAAAGCTTCGATCTGACAGAAATTTCTGAACAGGAAGAAGATC
TTGCCAAGGCGCTCCAGGAAGCAGATGACGCCCCAATCGTCAGCCTTGCAAACAAGATTCTGCTGAAAGCCTTGACTGAA
GGTGCCTCGGATATCCACGTAGAACCGCAGGAGGAAGGGCTGCGGGTCAGGCTACGCCGAGATGGGGTGCTACACCAAGA
ATTTGGAATGCTCCCGAAAAAAATTCAAGCAGCCTTGATTTCCCGCTTGAAGATCATGGCTAATCTTGATATCGCCGAGC
GTCGTGTTCCCCAAGACGGCCGAATCCGGCGCATGTTTCAGGGCCGCAAGATTGACTTTCGGGTTAATAGTCTGCCTAGC
CATTTCGGCGAAAAAATTTGTATGCGGTTGTTGGACAACTCAGCAACACAGCTGGGTTTAGATCAGTTGATTACCGATCC
AGATGCCCTCGCTCTGGTTCGTGACATGGGAAGTCGTCCCTATGGCTTGATTTTGGTGACTGGCCCAACAGGGTCTGGTA
AGTCCACAAGCTTGTATTCCTTGTTGGCAGAGCGCAATGATCCCGCCATCAACATCAACACCGCTGAAGATCCAATTGAA
TACACATTGCCCGGTCTGACCCAAGTGCAGGTGCTCCGAGAGAAGGGCATGAATTTTGCCTCGATCCTGAGGGCTTTTAT
GCGTCAGGATCCCGATGTGATTCTGGTGGGTGAGACACGAGATTTAGAAACGGCTCGTACAGCGATTGAAGCTGCCTTGA
CAGGGCACTTGGTCTTGACGACCCTACACGCCAACGATGCGCCCAGCGCGATCGCCCGTCTAAGTGAGATGGGGGTAGAA
CCTTATCTCGTCTCTGGTTCGCTGATTGGGGTTGTTTCGCAACGCTTAATGCGCCGAGTATGTCCTGATTGCCGCATTCC
CTATACGCCCAGCCCAGAAGAACTAGGTCGCTATGGTCTCTCAGCCAGCCAGGAACTTGATGTCACATTTTATAAGGCCA
GAACACTAATGGCTGACGAGCTCGCACAGGCGCGATCACAAGGGCAGGTGTGCAGAACCTGTCGGGGGACAGGCTACAAG
GGACGTGTAGGTGTCTATGAGGTGATGCGGGTTAATGAGGTCCTCCAAGTCGCGATTAACCAGGGGCTACCCACAGAACG
CCTCAAGGAAATTGCTGTGGAGCAGGGCATGAAGACGCTGCTCTCTTACAGCTTGGAACTGGTTCGCCAGGGTTACACCA
CCTTTGAAGAAGTCGATCGCGTCACCTTTACCGATTCTGGTGTGGAGGCTGAGCTCAAAGCAAAGCGTAAAATTGGTCTC
ACTTGCCATACCTGTGGGGCAGGGCTGCAACCGGAATGGCTGGACTGCCCTTATTGCCTAACGCCCCGTTTTGGGAATTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(232-499)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(25-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

61.818

99.099

0.613