Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | VSX76_RS07755 | Genome accession | NZ_CP143311 |
| Coordinates | 1232596..1233696 (+) | Length | 366 a.a. |
| NCBI ID | WP_379008017.1 | Uniprot ID | - |
| Organism | Methylophaga thalassica strain IOM01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1227596..1238696
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSX76_RS07750 (VSX76_07745) | dnaE | 1229003..1232500 (+) | 3498 | WP_330111120.1 | DNA polymerase III subunit alpha | - |
| VSX76_RS07755 (VSX76_07750) | pilU | 1232596..1233696 (+) | 1101 | WP_379008017.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| VSX76_RS07760 (VSX76_07755) | - | 1233756..1234712 (+) | 957 | WP_007145523.1 | acetyl-CoA carboxylase carboxyltransferase subunit alpha | - |
| VSX76_RS07765 (VSX76_07760) | tilS | 1234721..1236061 (+) | 1341 | WP_330111121.1 | tRNA lysidine(34) synthetase TilS | - |
| VSX76_RS07770 (VSX76_07765) | - | 1236147..1237778 (+) | 1632 | WP_007145521.1 | CTP synthase | - |
| VSX76_RS07775 (VSX76_07770) | kdsA | 1237783..1238628 (+) | 846 | WP_040576241.1 | 3-deoxy-8-phosphooctulonate synthase | - |
Sequence
Protein
Download Length: 366 a.a. Molecular weight: 40660.63 Da Isoelectric Point: 5.2934
>NTDB_id=928614 VSX76_RS07755 WP_379008017.1 1232596..1233696(+) (pilU) [Methylophaga thalassica strain IOM01]
MDMTPYFRLMADKDASDMFFCTGTEPHIKIQGVIRPVGTQKLAPGDVKEMAYSMMTDEQAKEFESTLEMNFAVPLKGVGR
FRVNIFRQRGECSIVIRYIRTTIPTFEQIGLPDVLGDVVMEKRGLILVVGATGSGKSTTLASMIGHRNRNSSSHILTIED
PLEFVHKHERSIVQQREVGIDTLSYENALKNALREAPDVILIGEIRDMETMKHAINYAETGHLCLATLHANNANQALDRI
INFFPEILHRQLLMDLSLNLRAIISQRLLPTKDAGRVPAVEVMINSPYISDLINKGEIGSIKDAMRDSNEKGTITFDQAL
LGLYRSGKITEEDALMNADSRNDLSLAIRLGDDSAGSDAPDELILS
MDMTPYFRLMADKDASDMFFCTGTEPHIKIQGVIRPVGTQKLAPGDVKEMAYSMMTDEQAKEFESTLEMNFAVPLKGVGR
FRVNIFRQRGECSIVIRYIRTTIPTFEQIGLPDVLGDVVMEKRGLILVVGATGSGKSTTLASMIGHRNRNSSSHILTIED
PLEFVHKHERSIVQQREVGIDTLSYENALKNALREAPDVILIGEIRDMETMKHAINYAETGHLCLATLHANNANQALDRI
INFFPEILHRQLLMDLSLNLRAIISQRLLPTKDAGRVPAVEVMINSPYISDLINKGEIGSIKDAMRDSNEKGTITFDQAL
LGLYRSGKITEEDALMNADSRNDLSLAIRLGDDSAGSDAPDELILS
Nucleotide
Download Length: 1101 bp
>NTDB_id=928614 VSX76_RS07755 WP_379008017.1 1232596..1233696(+) (pilU) [Methylophaga thalassica strain IOM01]
GTGGATATGACACCTTATTTCAGACTGATGGCAGACAAGGATGCCTCAGATATGTTTTTCTGTACGGGCACTGAACCCCA
TATCAAAATTCAGGGCGTTATCAGACCAGTCGGCACCCAGAAATTAGCCCCGGGTGACGTGAAAGAAATGGCTTATTCGA
TGATGACGGATGAGCAAGCAAAAGAGTTTGAAAGCACGCTTGAGATGAACTTTGCGGTGCCGCTTAAAGGTGTTGGGCGT
TTCCGGGTGAATATTTTCCGTCAACGTGGTGAATGTTCGATTGTGATTCGCTATATCAGAACGACGATCCCCACCTTTGA
ACAAATTGGCCTGCCTGATGTGCTCGGTGATGTGGTCATGGAGAAACGCGGACTGATTCTGGTGGTGGGGGCAACTGGCT
CCGGTAAATCAACGACCTTGGCATCAATGATCGGTCATCGTAACCGTAACTCCAGTTCACATATTCTTACCATTGAAGAT
CCGCTGGAGTTTGTGCACAAACACGAACGTTCAATTGTGCAACAGCGTGAAGTGGGTATTGATACCTTATCTTACGAAAA
TGCCCTAAAGAATGCCTTACGTGAAGCACCTGACGTGATTCTTATCGGTGAAATCCGTGATATGGAAACGATGAAACACG
CGATTAATTACGCTGAAACCGGTCATTTATGTTTAGCGACACTGCATGCCAATAACGCGAATCAGGCGCTGGACAGGATT
ATTAACTTTTTCCCTGAAATTTTGCACCGTCAGTTACTGATGGATTTATCTTTGAACTTACGTGCCATTATTTCTCAACG
CTTATTACCCACGAAAGACGCGGGTCGTGTGCCGGCAGTCGAAGTAATGATCAACTCGCCTTATATCTCCGATTTGATTA
ATAAAGGAGAAATTGGCAGTATCAAAGATGCCATGCGTGATAGTAATGAAAAAGGCACCATCACATTTGATCAGGCGCTG
CTTGGCCTGTATCGCAGTGGTAAGATCACAGAAGAAGACGCATTGATGAATGCTGATTCACGTAACGATTTGAGCCTGGC
CATTCGTCTTGGTGATGACAGTGCCGGGTCAGACGCACCAGATGAATTAATTCTCAGCTAA
GTGGATATGACACCTTATTTCAGACTGATGGCAGACAAGGATGCCTCAGATATGTTTTTCTGTACGGGCACTGAACCCCA
TATCAAAATTCAGGGCGTTATCAGACCAGTCGGCACCCAGAAATTAGCCCCGGGTGACGTGAAAGAAATGGCTTATTCGA
TGATGACGGATGAGCAAGCAAAAGAGTTTGAAAGCACGCTTGAGATGAACTTTGCGGTGCCGCTTAAAGGTGTTGGGCGT
TTCCGGGTGAATATTTTCCGTCAACGTGGTGAATGTTCGATTGTGATTCGCTATATCAGAACGACGATCCCCACCTTTGA
ACAAATTGGCCTGCCTGATGTGCTCGGTGATGTGGTCATGGAGAAACGCGGACTGATTCTGGTGGTGGGGGCAACTGGCT
CCGGTAAATCAACGACCTTGGCATCAATGATCGGTCATCGTAACCGTAACTCCAGTTCACATATTCTTACCATTGAAGAT
CCGCTGGAGTTTGTGCACAAACACGAACGTTCAATTGTGCAACAGCGTGAAGTGGGTATTGATACCTTATCTTACGAAAA
TGCCCTAAAGAATGCCTTACGTGAAGCACCTGACGTGATTCTTATCGGTGAAATCCGTGATATGGAAACGATGAAACACG
CGATTAATTACGCTGAAACCGGTCATTTATGTTTAGCGACACTGCATGCCAATAACGCGAATCAGGCGCTGGACAGGATT
ATTAACTTTTTCCCTGAAATTTTGCACCGTCAGTTACTGATGGATTTATCTTTGAACTTACGTGCCATTATTTCTCAACG
CTTATTACCCACGAAAGACGCGGGTCGTGTGCCGGCAGTCGAAGTAATGATCAACTCGCCTTATATCTCCGATTTGATTA
ATAAAGGAGAAATTGGCAGTATCAAAGATGCCATGCGTGATAGTAATGAAAAAGGCACCATCACATTTGATCAGGCGCTG
CTTGGCCTGTATCGCAGTGGTAAGATCACAGAAGAAGACGCATTGATGAATGCTGATTCACGTAACGATTTGAGCCTGGC
CATTCGTCTTGGTGATGACAGTGCCGGGTCAGACGCACCAGATGAATTAATTCTCAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.022 |
97.541 |
0.546 |
| pilU | Acinetobacter baylyi ADP1 |
53.371 |
97.268 |
0.519 |
| pilU | Vibrio cholerae strain A1552 |
53.09 |
97.268 |
0.516 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.944 |
97.268 |
0.437 |
| pilT | Neisseria meningitidis 8013 |
40.346 |
94.809 |
0.383 |
| pilT | Neisseria gonorrhoeae MS11 |
40.346 |
94.809 |
0.383 |
| pilT | Pseudomonas aeruginosa PAK |
41.617 |
91.257 |
0.38 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.018 |
91.257 |
0.374 |
| pilT | Vibrio cholerae strain A1552 |
41.141 |
90.984 |
0.374 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.141 |
90.984 |
0.374 |
| pilT | Acinetobacter baumannii strain A118 |
40.719 |
91.257 |
0.372 |
| pilT | Acinetobacter nosocomialis M2 |
40.719 |
91.257 |
0.372 |
| pilT | Acinetobacter baumannii D1279779 |
40.719 |
91.257 |
0.372 |
| pilT | Acinetobacter baylyi ADP1 |
40.426 |
89.891 |
0.363 |
| pilT | Legionella pneumophila strain Lp02 |
39.82 |
91.257 |
0.363 |
| pilT | Legionella pneumophila strain ERS1305867 |
39.82 |
91.257 |
0.363 |