Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   OCW38_RS02260 Genome accession   NZ_AP025480
Coordinates   464785..465822 (+) Length   345 a.a.
NCBI ID   WP_010435660.1    Uniprot ID   A0AAN0LU04
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 459785..470822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS02225 hemW 459872..461059 (-) 1188 WP_010435644.1 radical SAM family heme chaperone HemW -
  OCW38_RS02230 - 461059..461658 (-) 600 WP_010435646.1 XTP/dITP diphosphatase -
  OCW38_RS02235 - 461707..462138 (-) 432 WP_016768173.1 DUF4426 domain-containing protein -
  OCW38_RS02240 yggU 462169..462459 (-) 291 WP_010435651.1 DUF167 family protein YggU -
  OCW38_RS02245 - 462489..463046 (-) 558 WP_010435653.1 YggT family protein -
  OCW38_RS02250 proC 463123..463941 (-) 819 WP_010435654.1 pyrroline-5-carboxylate reductase -
  OCW38_RS02255 - 464054..464758 (-) 705 WP_010435657.1 YggS family pyridoxal phosphate-dependent enzyme -
  OCW38_RS02260 pilT 464785..465822 (+) 1038 WP_010435660.1 type IV pilus twitching motility protein PilT Machinery gene
  OCW38_RS02265 pilU 465837..466946 (+) 1110 WP_016768175.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  OCW38_RS02270 - 467003..467164 (-) 162 WP_016785941.1 hypothetical protein -
  OCW38_RS02275 ruvX 467263..467685 (-) 423 WP_004735480.1 Holliday junction resolvase RuvX -
  OCW38_RS02280 - 467734..468297 (-) 564 WP_016768176.1 YqgE/AlgH family protein -
  OCW38_RS02285 gshB 468414..469364 (-) 951 WP_004735482.1 glutathione synthase -
  OCW38_RS02290 rsmE 469374..470105 (-) 732 WP_010435671.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38178.70 Da        Isoelectric Point: 6.0495

>NTDB_id=91911 OCW38_RS02260 WP_010435660.1 464785..465822(+) (pilT) [Vibrio cyclitrophicus strain LMG 21359]
MDITELLDFSVKHNASDLHLSAGVSPMVRIDGEVRKLGIPALSHADVHRLVFEIMDDSQRGEFEEKLEVDFSFELPNVGR
FRVNAFNQARGCAAVFRTIPVEIPTLDQLGAPEIFEKIANYEKGLVLVTGPTGSGKSTTLAAMVDYVNRNHNKHILTIED
PIEFVHTNNKCLVNQREVHRDTHSFKAALRSALREDPDVILVGELRDQETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRVGGGRVACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
KQLIAQGLVDSDEVEKKIEIQASMF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=91911 OCW38_RS02260 WP_010435660.1 464785..465822(+) (pilT) [Vibrio cyclitrophicus strain LMG 21359]
ATGGATATCACTGAGTTACTAGATTTTAGTGTAAAGCATAACGCGTCAGATCTACATCTTTCTGCGGGTGTATCTCCAAT
GGTACGTATAGATGGTGAAGTAAGGAAGCTTGGAATACCAGCTTTGAGTCATGCTGATGTACATCGTTTAGTTTTTGAGA
TCATGGACGATTCACAACGCGGTGAGTTTGAGGAAAAATTGGAAGTCGACTTCTCTTTTGAATTACCCAATGTTGGTCGC
TTCCGTGTTAATGCTTTTAATCAAGCTCGTGGGTGTGCTGCTGTCTTTCGAACTATCCCTGTAGAGATCCCGACTTTAGA
TCAGCTTGGTGCGCCAGAAATCTTTGAAAAGATTGCGAACTACGAGAAAGGTTTAGTGCTTGTCACTGGCCCTACAGGTT
CTGGTAAATCGACAACTTTGGCGGCGATGGTGGATTACGTAAACCGCAATCACAACAAACACATTTTGACGATTGAAGAT
CCAATTGAATTCGTTCACACCAATAATAAATGCCTAGTAAACCAGCGTGAGGTTCATCGTGATACTCACAGCTTTAAAGC
GGCGTTGCGCAGTGCATTACGTGAGGATCCGGACGTGATTCTTGTTGGTGAACTTCGTGACCAAGAGACGATCAGCTTAG
CGTTAACCGCAGCTGAAACGGGTCACTTAGTTTTTGGTACTTTGCATACAAGCTCTGCGGCAAAAACTATCGACCGTATT
ATCGACGTTTTCCCAGGTAGCGACAAAGATATGGTTCGTTCAATGTTATCTGAATCACTACGCTCGGTGATTGCTCAAAA
GCTGTTAAAACGTGTTGGTGGTGGTCGTGTGGCTTGTCATGAAATAATGATGGCGACACCTGCAATTAGAAACTTGATCC
GTGAAGACAAAGTCGCGCAGATGTACTCGATCATTCAAACGGGTGCCGCACATGGCATGCAAACCATGGAGCAAAATGCG
AAGCAATTGATCGCGCAAGGTTTGGTTGATTCGGACGAGGTCGAGAAAAAGATCGAAATTCAAGCCTCTATGTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

88.986

100

0.89
  pilT Vibrio cholerae strain A1552

88.986

100

0.89
  pilT Acinetobacter baumannii D1279779

72.644

95.362

0.693
  pilT Acinetobacter baumannii strain A118

72.644

95.362

0.693
  pilT Acinetobacter nosocomialis M2

72.34

95.362

0.69
  pilT Pseudomonas stutzeri DSM 10701

69.733

97.681

0.681
  pilT Acinetobacter baylyi ADP1

70.909

95.652

0.678
  pilT Pseudomonas aeruginosa PAK

68.529

98.551

0.675
  pilT Legionella pneumophila strain Lp02

68.085

95.362

0.649
  pilT Legionella pneumophila strain ERS1305867

68.085

95.362

0.649
  pilT Neisseria meningitidis 8013

62.609

100

0.626
  pilT Neisseria gonorrhoeae MS11

62.319

100

0.623
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.44

98.841

0.499
  pilU Vibrio cholerae strain A1552

43.385

94.203

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.159

95.072

0.391
  pilU Acinetobacter baylyi ADP1

40

92.754

0.371

Multiple sequence alignment