Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   U7E18_RS15360 Genome accession   NZ_CP140752
Coordinates   3322260..3322685 (-) Length   141 a.a.
NCBI ID   WP_343364155.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PkXoo2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3317260..3327685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7E18_RS15345 (U7E18_15345) - 3318400..3319926 (-) 1527 WP_075241021.1 hypothetical protein -
  U7E18_RS15350 (U7E18_15350) - 3319896..3320525 (-) 630 WP_011408070.1 hypothetical protein -
  U7E18_RS15355 (U7E18_15355) - 3320536..3322125 (-) 1590 WP_011408069.1 phosphoethanolamine transferase -
  U7E18_RS15360 (U7E18_15360) pilA2 3322260..3322685 (-) 426 WP_343364155.1 pilin Machinery gene
  U7E18_RS15365 (U7E18_15365) pilC 3323040..3324299 (+) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  U7E18_RS15370 (U7E18_15370) - 3324306..3325169 (+) 864 WP_011258358.1 A24 family peptidase -
  U7E18_RS15375 (U7E18_15375) coaE 3325183..3325791 (+) 609 WP_011258357.1 dephospho-CoA kinase -
  U7E18_RS15380 (U7E18_15380) - 3325862..3327181 (+) 1320 WP_117231576.1 IS701-like element ISXo15 family transposase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14412.74 Da        Isoelectric Point: 9.0090

>NTDB_id=915376 U7E18_RS15360 WP_343364155.1 3322260..3322685(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain PkXoo2]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLGEALTMSAPAKLAVTETASSLGGVANVTLANSGYSFPGATK
YVSNVTIADGTGLVTVTSTVPNAAGTILLTPKDVGGGQLKWTCSSAILTKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=915376 U7E18_RS15360 WP_343364155.1 3322260..3322685(-) (pilA2) [Xanthomonas oryzae pv. oryzae strain PkXoo2]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCGGTGAAGCGCTGACGATGTCGGCGCCTGCCAAACTTGCGGTAA
CGGAGACTGCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACTCATTCCCGGGTGCCACGAAG
TATGTCAGTAACGTCACCATCGCCGATGGTACGGGCCTAGTCACTGTAACTTCTACCGTGCCGAACGCAGCCGGTACCAT
CCTGCTGACCCCGAAGGATGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCTCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.471

96.454

0.496
  pilA2 Legionella pneumophila strain ERS1305867

51.471

96.454

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

41.818

100

0.489
  comP Acinetobacter baylyi ADP1

42.857

100

0.447
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.514

100

0.44
  pilE Neisseria gonorrhoeae strain FA1090

36.686

100

0.44
  pilE Neisseria gonorrhoeae MS11

36.875

100

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.446

98.582

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.222

95.745

0.404
  pilA/pilA1 Eikenella corrodens VA1

37.333

100

0.397
  pilA Acinetobacter baumannii strain A118

38.298

100

0.383
  pilA Pseudomonas aeruginosa PAK

36

100

0.383
  pilA Vibrio cholerae C6706

31.875

100

0.362
  pilA Vibrio cholerae strain A1552

31.875

100

0.362
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

31.875

100

0.362
  pilA Vibrio parahaemolyticus RIMD 2210633

40.157

90.071

0.362