Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   U2P90_RS03820 Genome accession   NZ_CP140098
Coordinates   782763..783977 (+) Length   404 a.a.
NCBI ID   WP_322473863.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777763..788977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS03800 (U2P90_03800) - 777783..778568 (-) 786 WP_322473860.1 enoyl-ACP reductase FabI -
  U2P90_RS03805 (U2P90_03805) pgeF 778717..779448 (+) 732 WP_322473861.1 peptidoglycan editing factor PgeF -
  U2P90_RS03810 (U2P90_03810) - 779445..779951 (+) 507 WP_295816422.1 YqeG family HAD IIIA-type phosphatase -
  U2P90_RS03815 (U2P90_03815) pilB 780056..782734 (+) 2679 WP_322473862.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  U2P90_RS03820 (U2P90_03820) pilT 782763..783977 (+) 1215 WP_322473863.1 type IV pilus twitching motility protein PilT Machinery gene
  U2P90_RS03825 (U2P90_03825) lon 784077..786512 (-) 2436 WP_322473864.1 endopeptidase La -
  U2P90_RS03830 (U2P90_03830) clpX 786672..787880 (-) 1209 WP_295821675.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  U2P90_RS03835 (U2P90_03835) clpP 787877..788488 (-) 612 WP_380101305.1 ATP-dependent Clp protease proteolytic subunit -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43884.20 Da        Isoelectric Point: 7.5639

>NTDB_id=912489 U2P90_RS03820 WP_322473863.1 782763..783977(+) (pilT) [Deinococcus sp. AB2017081]
MNTSSADITDILRLAAEKGASDVILTVGLPPQFKLHGVYDSQGFGELVGTETRRLMYSMMNEKQQRTFEEKRELDFSFAL
GEKARFRVNAFMQRGNVGGVLRLIPTKIKSAQEMGLPQNVIDIAGAPRGLVLVTGPTGSGKSTTLAAMIDHINANKKMHI
MTIEDPIEFMHTHKQSIINQREVGSDTLDFNNALRAVLRQAPDVILVGELRDYETIKAAVTAAETGHLVMGTLHTNSAPE
SIDRIVDVFPEEQQEQIRVQLANNLVAVMTQQLVPKLDGGGRILAYELLVANPAVRSLIREGKTYQIVSVMQTGAREGMI
TMDAYLANLYRRRLISFDIGVERAVDPKEFARLANDPTVGSSLPAAGPAMAGGQAGGYGASARPAEPARPTTPPSSNSTS
FGRR

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=912489 U2P90_RS03820 WP_322473863.1 782763..783977(+) (pilT) [Deinococcus sp. AB2017081]
ATGAACACATCCAGCGCCGACATCACCGACATCCTGCGTCTCGCCGCCGAGAAGGGCGCGTCCGACGTGATCCTGACGGT
CGGACTGCCGCCGCAGTTCAAGCTGCACGGCGTCTACGATTCCCAGGGCTTCGGGGAACTGGTGGGCACCGAGACCCGCC
GCCTGATGTACTCGATGATGAACGAGAAGCAGCAGCGCACCTTCGAGGAGAAGCGCGAGCTGGACTTCTCCTTCGCGCTG
GGCGAGAAGGCCCGCTTCCGCGTGAACGCGTTCATGCAGCGTGGCAACGTGGGCGGCGTGCTGCGTCTGATCCCCACCAA
GATCAAGAGCGCCCAGGAGATGGGCCTGCCGCAGAACGTGATCGACATCGCGGGGGCGCCGCGCGGGCTGGTGCTCGTGA
CCGGCCCCACCGGCTCGGGCAAGTCCACGACGCTGGCGGCCATGATCGACCACATCAACGCCAACAAGAAGATGCACATC
ATGACGATCGAGGATCCGATCGAGTTCATGCACACCCACAAGCAGTCGATCATCAACCAGCGCGAGGTCGGCTCCGACAC
CCTGGATTTCAACAACGCGCTGCGTGCGGTGCTGCGCCAGGCCCCGGACGTCATCCTGGTCGGCGAGCTCCGCGACTACG
AGACCATCAAGGCCGCCGTGACCGCCGCCGAGACCGGGCACCTGGTCATGGGCACCCTGCACACGAACAGCGCCCCCGAG
TCCATCGACCGAATCGTGGACGTATTCCCCGAGGAACAGCAGGAGCAGATCCGCGTGCAGCTCGCGAACAACCTCGTGGC
GGTCATGACCCAGCAGCTGGTACCGAAACTTGACGGCGGCGGGCGCATCCTGGCTTACGAACTGCTGGTCGCCAACCCCG
CCGTCCGCTCGCTGATCCGCGAGGGTAAGACCTACCAGATCGTGTCGGTCATGCAGACCGGCGCGCGCGAGGGCATGATC
ACCATGGACGCCTACCTGGCCAACCTGTACCGGCGCCGCCTGATCTCCTTCGACATCGGCGTGGAACGCGCCGTCGACCC
CAAGGAGTTCGCGCGGCTGGCCAACGACCCGACCGTGGGCAGCAGCCTTCCCGCCGCTGGCCCCGCCATGGCAGGCGGAC
AGGCCGGCGGGTACGGGGCCAGCGCCCGCCCGGCTGAGCCGGCTCGCCCGACCACGCCGCCCTCCAGCAACTCGACGTCC
TTCGGTCGCCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(49-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

75.862

100

0.762
  pilT Acinetobacter nosocomialis M2

51.744

85.149

0.441
  pilT Acinetobacter baumannii D1279779

51.744

85.149

0.441
  pilT Acinetobacter baumannii strain A118

51.744

85.149

0.441
  pilT Pseudomonas stutzeri DSM 10701

51.163

85.149

0.436
  pilT Neisseria meningitidis 8013

51.613

84.406

0.436
  pilT Acinetobacter baylyi ADP1

50.872

85.149

0.433
  pilT Pseudomonas aeruginosa PAK

50.872

85.149

0.433
  pilT Neisseria gonorrhoeae MS11

51.335

83.416

0.428
  pilT Legionella pneumophila strain ERS1305867

47.965

85.149

0.408
  pilT Legionella pneumophila strain Lp02

47.965

85.149

0.408
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.544

81.436

0.403
  pilT Vibrio cholerae strain A1552

49.544

81.436

0.403
  pilU Acinetobacter baylyi ADP1

43.275

84.653

0.366
  pilU Pseudomonas stutzeri DSM 10701

45.122

81.188

0.366