Detailed information NTG0912488

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: U2P90_RS03815
• Genome accession: NZ_CP140098
• Coordinates: 780056..782734 (+)
• Length: 892 a.a.
• NCBI ID: WP_322473862.1
• Uniprot ID: -
• Organism: Deinococcus sp. AB2017081
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 775056..787734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U2P90_RS03785 (U2P90_03785)	-	775237..775638 (+)	402	WP_322473858.1	ester cyclase	-
U2P90_RS03790 (U2P90_03790)	-	775659..776375 (-)	717	WP_295816426.1	IclR family transcriptional regulator	-
U2P90_RS03795 (U2P90_03795)	-	776473..777516 (-)	1044	WP_322473859.1	M42 family metallopeptidase	-
U2P90_RS03800 (U2P90_03800)	-	777783..778568 (-)	786	WP_322473860.1	enoyl-ACP reductase FabI	-
U2P90_RS03805 (U2P90_03805)	pgeF	778717..779448 (+)	732	WP_322473861.1	peptidoglycan editing factor PgeF	-
U2P90_RS03810 (U2P90_03810)	-	779445..779951 (+)	507	WP_295816422.1	YqeG family HAD IIIA-type phosphatase	-
U2P90_RS03815 (U2P90_03815)	pilB	780056..782734 (+)	2679	WP_322473862.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
U2P90_RS03820 (U2P90_03820)	pilT	782763..783977 (+)	1215	WP_322473863.1	type IV pilus twitching motility protein PilT	Machinery gene
U2P90_RS03825 (U2P90_03825)	lon	784077..786512 (-)	2436	WP_322473864.1	endopeptidase La	-

Sequence

Protein

• Length: 892 a.a.
• Molecular weight: 97073.56 Da
• Isoelectric Point: 5.2623

>NTDB_id=912488 U2P90_RS03815 WP_322473862.1 780056..782734(+) (pilB) [Deinococcus sp. AB2017081]
MALSIGDRRLGAILLEQGYVNDVDLQKALVRHAEVGGRLAEILIGAGMVGEKRIARAIEEALGIPLVNLMVVQPDAQAVM
AVRAQTALSSLAFPFAIEGGTLRVALVDPLSSISIEALEDDSGLMIEPYQALRDEINWAIATHYPELGLTPVMPEAVAEG
GGGGKLGQRLISRGLITDAQLQVALDAQQQTGEPLGATLYAQKAITEDQLYEVLADQIGAVYLKNPRDFKPTDEVLGTML
RADALRLSAVPVDESGGSVTVVASDPRKREDIEALIGRRVQFLLAKPRDVESLIEKYYPQRGRLGEQMVQQGTLSRAQLR
EALQVQAREGRVKPLGEVIIELGFAGADEIDTALQKQNSGGGRLEDTLVQSGKLSPEMLARSLAAQLGYEFLDPVQNPPD
PKVALMIPEATARRYAVVPVRLQGESLIVAMKDPRNVFALDDLKLITGREVLPAVMAEKDIIRLIERYFGNKDMADLNQR
LVQESNKRDKDAKRADDVDISAGLDDNAVVRVVDNLIREAALQEASDIHIEPTEHDVRVRYRVDGVLREQNSLPKGAAQS
MLARIKIMGQLDISERRIPQDGRVRFKKGSIDLDLRLSTLPTVYGEKAVMRLLQKASNIPEVEQLGFSEHNYQRYLDVIH
KPNGIFLVTGPTGSGKSFTSFSTLKRIAVPEKNTTTIEDPVEYEIPGIIQSQVNPVAGMTFARALRAFLRQDPDIIFVGE
IRDTETAKIAVEAALTGHLVLATLHTNDAPGAIVRLEEMGVEHFNIGAAVVGVVAQRLVRKVCPDCKAPTNADPDVLRRL
GITERDLRGAQLMRGAGCPRCGGTGYKGRMGIHELMVIDEPLRVAIGSGKNASEINDVAINQCGMKTLRQDGIAKALQGI
TTLEEVLAVTSK

Nucleotide

• Length: 2679 bp

>NTDB_id=912488 U2P90_RS03815 WP_322473862.1 780056..782734(+) (pilB) [Deinococcus sp. AB2017081]
ATGGCTCTCTCAATCGGTGACCGGCGCCTCGGCGCGATCCTGCTCGAACAGGGCTACGTGAACGATGTGGATCTCCAGAA
GGCCCTGGTGCGCCACGCCGAGGTCGGGGGGCGGCTCGCGGAGATCCTGATCGGTGCAGGCATGGTCGGCGAGAAACGCA
TCGCCCGGGCCATCGAGGAGGCGCTGGGCATTCCGCTGGTGAACCTGATGGTCGTGCAGCCCGACGCCCAGGCGGTCATG
GCGGTGCGGGCCCAGACCGCCCTGAGCTCCCTGGCCTTCCCCTTCGCCATCGAGGGCGGCACGCTGCGGGTCGCCCTGGT
CGATCCGCTGTCGAGCATCAGTATCGAGGCGCTCGAGGACGACAGCGGCCTGATGATCGAGCCCTACCAGGCCCTGCGCG
ACGAGATCAACTGGGCGATCGCCACGCACTACCCCGAACTGGGTCTGACCCCTGTCATGCCTGAAGCAGTGGCCGAGGGG
GGCGGCGGCGGCAAGCTCGGCCAGCGACTGATCTCGCGCGGCCTGATCACCGACGCCCAGCTCCAGGTGGCGCTCGATGC
CCAGCAGCAGACCGGCGAGCCGCTGGGGGCCACCCTGTACGCGCAGAAGGCCATCACCGAGGACCAGCTGTACGAGGTGC
TGGCCGACCAGATCGGCGCGGTGTACCTGAAAAATCCCCGCGACTTCAAACCCACCGACGAGGTGCTGGGCACCATGCTG
CGGGCCGACGCCCTGCGGCTCTCGGCCGTACCGGTCGACGAGAGCGGCGGCAGCGTCACGGTGGTCGCCTCTGATCCCCG
CAAGCGCGAGGACATCGAGGCGCTGATCGGCCGCCGCGTGCAGTTTCTGCTCGCCAAGCCGCGTGACGTCGAGTCCCTGA
TCGAGAAGTACTATCCCCAGCGCGGCCGGCTGGGCGAGCAGATGGTGCAGCAGGGCACGCTGTCCCGCGCCCAGCTGCGC
GAGGCGCTGCAGGTGCAGGCCCGCGAGGGGCGGGTCAAGCCGCTGGGCGAGGTGATCATCGAGCTGGGCTTCGCCGGTGC
CGACGAGATCGATACCGCCCTGCAGAAGCAGAATTCGGGTGGGGGCCGCCTGGAGGACACCCTGGTCCAGTCCGGCAAGC
TCTCCCCGGAGATGCTGGCCCGCTCGCTGGCCGCGCAGCTCGGCTACGAGTTCCTCGATCCCGTCCAGAACCCGCCGGAT
CCCAAGGTCGCCCTGATGATTCCCGAGGCGACTGCCCGCCGCTACGCCGTGGTGCCGGTGCGGCTCCAGGGCGAGTCGCT
GATCGTTGCCATGAAGGATCCGCGCAACGTCTTCGCGCTGGACGACCTGAAGCTGATCACCGGGCGCGAGGTGCTGCCGG
CGGTCATGGCCGAGAAGGACATCATCCGCCTGATCGAGCGCTACTTCGGCAACAAGGACATGGCCGACCTGAACCAGCGC
CTGGTGCAGGAGAGCAACAAGCGCGACAAGGATGCCAAACGTGCCGACGACGTGGACATCTCGGCCGGGCTCGACGACAA
CGCCGTGGTGCGCGTTGTGGACAACCTGATCCGTGAGGCGGCGCTGCAGGAGGCCTCGGACATTCACATTGAGCCGACCG
AACACGATGTCCGGGTGCGCTACCGGGTCGACGGCGTGCTGCGCGAGCAGAACTCGCTGCCCAAGGGAGCCGCGCAGAGC
ATGCTGGCCCGTATCAAGATCATGGGCCAGCTCGACATCAGCGAGCGGCGCATCCCACAGGACGGCCGCGTGCGCTTCAA
GAAGGGCAGCATCGACCTCGACCTGCGACTGTCCACCCTGCCCACCGTGTACGGCGAGAAGGCCGTCATGCGTCTGTTGC
AGAAGGCGAGCAACATCCCGGAAGTCGAGCAGCTGGGCTTCAGTGAACACAACTACCAGCGCTATCTCGACGTGATCCAC
AAGCCCAACGGCATCTTTCTGGTGACCGGCCCCACGGGGTCGGGCAAGTCCTTCACCAGTTTTTCCACCCTCAAGCGCAT
CGCGGTGCCCGAGAAGAACACGACCACCATCGAGGACCCGGTCGAATACGAGATTCCGGGGATCATCCAGTCGCAGGTGA
ACCCGGTCGCCGGCATGACCTTCGCCCGTGCCCTGCGCGCCTTCCTGCGTCAGGACCCCGACATCATCTTCGTGGGGGAA
ATCCGTGACACCGAGACCGCCAAGATCGCCGTGGAAGCGGCGCTGACCGGTCACCTGGTGCTGGCCACGCTGCACACCAA
CGACGCGCCCGGCGCGATCGTGCGCCTGGAGGAGATGGGCGTCGAGCACTTCAACATCGGCGCGGCCGTGGTGGGTGTGG
TCGCGCAGCGCCTGGTGCGCAAGGTCTGTCCGGACTGCAAGGCCCCCACCAACGCCGACCCCGACGTGCTGCGCCGCCTG
GGCATCACCGAGCGCGACCTGCGCGGCGCCCAGCTGATGCGCGGCGCAGGCTGCCCGCGCTGCGGCGGCACCGGCTACAA
GGGCCGCATGGGCATTCACGAGCTGATGGTCATCGACGAGCCGCTGCGCGTCGCCATCGGTTCGGGCAAGAACGCCAGCG
AGATCAACGACGTCGCCATCAACCAGTGCGGCATGAAGACCCTGCGCCAGGACGGCATCGCCAAGGCCCTCCAGGGCATC
ACCACGCTGGAAGAAGTGCTCGCCGTCACGAGCAAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (516-781)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (368-472)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-146)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (199-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	77.803	100	0.778
pilF	Thermus thermophilus HB27	54.86	100	0.55