Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SOI81_RS13205 Genome accession   NZ_CP139286
Coordinates   2806868..2807905 (+) Length   345 a.a.
NCBI ID   WP_025470368.1    Uniprot ID   A0A151YQY4
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2801868..2812905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS13195 (SOI81_13195) sbcC 2802252..2805848 (+) 3597 WP_320540897.1 AAA family ATPase -
  SOI81_RS13200 (SOI81_13200) yggS 2806049..2806741 (-) 693 WP_320540898.1 YggS family pyridoxal phosphate-dependent enzyme -
  SOI81_RS13205 (SOI81_13205) pilT 2806868..2807905 (+) 1038 WP_025470368.1 type IV pilus twitching motility protein PilT Machinery gene
  SOI81_RS13210 (SOI81_13210) pilU 2807925..2809043 (+) 1119 WP_320540899.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  SOI81_RS13215 (SOI81_13215) fur 2809113..2809550 (-) 438 WP_016141990.1 ferric iron uptake transcriptional regulator -
  SOI81_RS13220 (SOI81_13220) omlA 2809662..2810060 (+) 399 WP_002121740.1 outer membrane protein assembly factor BamE -
  SOI81_RS13225 (SOI81_13225) - 2810125..2810439 (-) 315 WP_174755593.1 RnfH family protein -
  SOI81_RS13230 (SOI81_13230) - 2810439..2811506 (-) 1068 WP_320540900.1 hypothetical protein -
  SOI81_RS13235 (SOI81_13235) - 2811660..2812115 (-) 456 WP_002121698.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38316.92 Da        Isoelectric Point: 6.7269

>NTDB_id=908763 SOI81_RS13205 WP_025470368.1 2806868..2807905(+) (pilT) [Acinetobacter pittii strain AbaK]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALDHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMMDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KGLVARGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=908763 SOI81_RS13205 WP_025470368.1 2806868..2807905(+) (pilT) [Acinetobacter pittii strain AbaK]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACACTTGTCTGCTGGCATGCCACCAAT
GATTCGCGTTGATGGTGAGGTTCGTCGCATTAACTTACCAGCTCTAGATCATAAAGATGTTCACCGTCTGGTCTATGACA
TCATGAATGATAAACAGCGTCGTGACTACGAAGAAAAACTTGAAACCGACTTTTCTTTTGAAGTGCCTAATGTTGCGCGT
TTCCGTGTTAACGCATTTAATCAAAACCGTGGTGCTGGTGCAGTGTTTCGTACCATTCCTTCCAAAGTACTTACCATGGA
AGATTTAGGCTTAGGTCAAATCTTTAAAGATATTTGTGACTATCCACGCGGCATTGTACTGGTTACAGGCCCAACAGGTT
CAGGTAAATCCACCACACTTGCAGCGATGATGGACTACATTAATGAAAACCGTTATGACCACATTTTAACGGTTGAAGAC
CCTATCGAATTTGTACACCAGTCTAAGAAATGTCTCATCAACCAACGTGAAGTGCATCGTGATACACACGGCTTTAATGA
AGCGCTACGTTCAGCACTGCGTGAAGACCCAGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAGACTATTCGTTTAG
CGCTTACTGCTGCCGAAACAGGCCATTTGGTGTTTGGTACGCTCCATACCACTTCTGCTGCGAAAACCATTGACCGTGTG
ATTGATGTATTCCCAGCCGAAGAAAAAGACATGGTTCGTGCCATGTTATCAGAATCTTTACAGGCTGTTATTTCACAAAC
TCTGCTTAAAAAGAATGGCGGCGGTCGTGTGGCAGCCCATGAAATCATGATTGGTATTCCTGCCATTCGTAACTTAATTC
GTGAAAATAAAGTCGCGCAAATGTACTCAGCTATTCAGACTGGTGCGAATCATGGCATGACCACCCTCGACCAAAGCTTA
AAAGGTTTAGTCGCTCGCGGTGTAATCAGCCCACAAACGGCTCGTACTGCTGCTAAACAGCCTGAATCATTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YQY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baumannii D1279779

99.42

100

0.994
  pilT Acinetobacter baumannii strain A118

99.42

100

0.994
  pilT Acinetobacter nosocomialis M2

99.13

100

0.991
  pilT Acinetobacter baylyi ADP1

88.953

99.71

0.887
  pilT Pseudomonas stutzeri DSM 10701

84.012

99.71

0.838
  pilT Pseudomonas aeruginosa PAK

83.721

99.71

0.835
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.726

97.391

0.699
  pilT Vibrio cholerae strain A1552

71.726

97.391

0.699
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.597

97.101

0.394
  pilU Acinetobacter baylyi ADP1

39.017

100

0.391