Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | R4Z10_RS16600 | Genome accession | NZ_CP137636 |
| Coordinates | 3256373..3257449 (-) | Length | 358 a.a. |
| NCBI ID | WP_338470403.1 | Uniprot ID | - |
| Organism | Niallia sp. XMNu-256 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3251373..3262449
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R4Z10_RS16580 (R4Z10_16575) | radC | 3252393..3253082 (-) | 690 | WP_338470399.1 | DNA repair protein RadC | - |
| R4Z10_RS16585 (R4Z10_16580) | - | 3253129..3253695 (-) | 567 | WP_338470400.1 | Maf family protein | - |
| R4Z10_RS16590 (R4Z10_16585) | - | 3253887..3254975 (-) | 1089 | WP_338470401.1 | hypothetical protein | - |
| R4Z10_RS16595 (R4Z10_16590) | - | 3255132..3256343 (-) | 1212 | WP_338470402.1 | type II secretion system F family protein | - |
| R4Z10_RS16600 (R4Z10_16595) | pilT | 3256373..3257449 (-) | 1077 | WP_338470403.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| R4Z10_RS16605 (R4Z10_16600) | - | 3257500..3259164 (-) | 1665 | WP_338470404.1 | ATPase, T2SS/T4P/T4SS family | - |
| R4Z10_RS16610 (R4Z10_16605) | - | 3259208..3260941 (-) | 1734 | WP_338470405.1 | hypothetical protein | - |
| R4Z10_RS16615 (R4Z10_16610) | - | 3260938..3261498 (-) | 561 | WP_338470406.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 39534.33 Da Isoelectric Point: 7.2643
>NTDB_id=899627 R4Z10_RS16600 WP_338470403.1 3256373..3257449(-) (pilT) [Niallia sp. XMNu-256]
MKGIRAMITTNVLTMEKLLHFAFKNNASDLHITTGVTPIVRINGKLKRIGVDNLTPEDTLRMAQEITTKDQFERFLEVGE
LDFSFSLKGICRFRVNTYRQRGSVGIVCRVINSQIPTIESLNLPSVTKEFAKNTQGILLVTGPTGSGKSTTLAAIIDYIN
ETQSKHILTLEDPIEYLHRHKNSIVNQREIGQDSQSFSVGLRAALRQDPDVILVGEMRDLDTIQTAITAAETGHLVLATL
HTTGAAQTVDRIIDVFSAEHQQQIRTQLASTLVGVISQRLLPTAEGSGRVAAFEILVSNYAVANLIRSNKIHQIQTVLET
GKASGMMTMNMAVSQLVERGMVTEAIADEYVPNWDKHQ
MKGIRAMITTNVLTMEKLLHFAFKNNASDLHITTGVTPIVRINGKLKRIGVDNLTPEDTLRMAQEITTKDQFERFLEVGE
LDFSFSLKGICRFRVNTYRQRGSVGIVCRVINSQIPTIESLNLPSVTKEFAKNTQGILLVTGPTGSGKSTTLAAIIDYIN
ETQSKHILTLEDPIEYLHRHKNSIVNQREIGQDSQSFSVGLRAALRQDPDVILVGEMRDLDTIQTAITAAETGHLVLATL
HTTGAAQTVDRIIDVFSAEHQQQIRTQLASTLVGVISQRLLPTAEGSGRVAAFEILVSNYAVANLIRSNKIHQIQTVLET
GKASGMMTMNMAVSQLVERGMVTEAIADEYVPNWDKHQ
Nucleotide
Download Length: 1077 bp
>NTDB_id=899627 R4Z10_RS16600 WP_338470403.1 3256373..3257449(-) (pilT) [Niallia sp. XMNu-256]
ATGAAGGGAATAAGAGCGATGATAACAACAAATGTTTTGACAATGGAAAAATTACTTCATTTTGCTTTTAAAAACAATGC
TTCAGATTTACACATAACAACAGGTGTTACACCGATTGTACGGATCAATGGAAAATTAAAAAGAATTGGTGTAGACAATT
TGACACCTGAAGATACACTGCGAATGGCACAAGAAATTACAACAAAGGATCAGTTTGAACGCTTTCTTGAAGTTGGAGAG
CTGGACTTTTCCTTTTCGTTAAAAGGGATTTGCCGTTTTCGGGTCAATACATACAGACAAAGAGGCTCGGTTGGAATTGT
CTGTCGTGTAATTAACAGCCAAATTCCTACGATTGAGTCGTTAAACCTACCTTCTGTTACAAAGGAATTCGCTAAGAACA
CACAAGGGATCTTACTTGTCACAGGGCCAACCGGGAGTGGTAAATCTACGACATTGGCTGCTATTATTGATTATATTAAT
GAGACCCAAAGTAAGCATATTTTGACATTAGAAGATCCGATTGAATATCTTCATCGTCATAAAAATAGTATTGTGAATCA
ACGCGAAATTGGTCAAGATAGTCAATCTTTTTCAGTTGGATTGCGGGCTGCCCTTCGTCAAGACCCTGATGTGATTCTCG
TTGGAGAGATGCGGGACCTAGATACCATTCAAACCGCGATTACTGCGGCTGAAACTGGCCATCTTGTGTTAGCAACCCTT
CACACGACCGGTGCTGCCCAAACGGTTGATCGGATCATTGATGTATTTTCTGCTGAACATCAACAGCAAATACGTACACA
ATTAGCCAGCACATTAGTCGGAGTCATTTCACAACGATTATTGCCGACAGCGGAAGGAAGCGGGCGAGTGGCGGCTTTTG
AAATATTAGTTTCAAACTATGCAGTCGCCAATTTAATTCGCTCAAATAAAATTCACCAAATTCAAACCGTATTGGAAACA
GGTAAAGCTAGTGGCATGATGACAATGAATATGGCTGTTTCCCAATTAGTCGAAAGAGGGATGGTTACCGAAGCGATCGC
AGATGAGTATGTTCCAAACTGGGATAAACATCAATAA
ATGAAGGGAATAAGAGCGATGATAACAACAAATGTTTTGACAATGGAAAAATTACTTCATTTTGCTTTTAAAAACAATGC
TTCAGATTTACACATAACAACAGGTGTTACACCGATTGTACGGATCAATGGAAAATTAAAAAGAATTGGTGTAGACAATT
TGACACCTGAAGATACACTGCGAATGGCACAAGAAATTACAACAAAGGATCAGTTTGAACGCTTTCTTGAAGTTGGAGAG
CTGGACTTTTCCTTTTCGTTAAAAGGGATTTGCCGTTTTCGGGTCAATACATACAGACAAAGAGGCTCGGTTGGAATTGT
CTGTCGTGTAATTAACAGCCAAATTCCTACGATTGAGTCGTTAAACCTACCTTCTGTTACAAAGGAATTCGCTAAGAACA
CACAAGGGATCTTACTTGTCACAGGGCCAACCGGGAGTGGTAAATCTACGACATTGGCTGCTATTATTGATTATATTAAT
GAGACCCAAAGTAAGCATATTTTGACATTAGAAGATCCGATTGAATATCTTCATCGTCATAAAAATAGTATTGTGAATCA
ACGCGAAATTGGTCAAGATAGTCAATCTTTTTCAGTTGGATTGCGGGCTGCCCTTCGTCAAGACCCTGATGTGATTCTCG
TTGGAGAGATGCGGGACCTAGATACCATTCAAACCGCGATTACTGCGGCTGAAACTGGCCATCTTGTGTTAGCAACCCTT
CACACGACCGGTGCTGCCCAAACGGTTGATCGGATCATTGATGTATTTTCTGCTGAACATCAACAGCAAATACGTACACA
ATTAGCCAGCACATTAGTCGGAGTCATTTCACAACGATTATTGCCGACAGCGGAAGGAAGCGGGCGAGTGGCGGCTTTTG
AAATATTAGTTTCAAACTATGCAGTCGCCAATTTAATTCGCTCAAATAAAATTCACCAAATTCAAACCGTATTGGAAACA
GGTAAAGCTAGTGGCATGATGACAATGAATATGGCTGTTTCCCAATTAGTCGAAAGAGGGATGGTTACCGAAGCGATCGC
AGATGAGTATGTTCCAAACTGGGATAAACATCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Neisseria meningitidis 8013 |
51.183 |
94.413 |
0.483 |
| pilT | Neisseria gonorrhoeae MS11 |
50.888 |
94.413 |
0.48 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50 |
93.296 |
0.466 |
| pilT | Acinetobacter baumannii strain A118 |
48.657 |
93.575 |
0.455 |
| pilT | Acinetobacter nosocomialis M2 |
48.657 |
93.575 |
0.455 |
| pilT | Acinetobacter baumannii D1279779 |
48.657 |
93.575 |
0.455 |
| pilT | Vibrio cholerae strain A1552 |
48.788 |
92.179 |
0.45 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.788 |
92.179 |
0.45 |
| pilT | Legionella pneumophila strain ERS1305867 |
47.214 |
95.251 |
0.45 |
| pilT | Legionella pneumophila strain Lp02 |
47.214 |
95.251 |
0.45 |
| pilT | Pseudomonas aeruginosa PAK |
48.048 |
93.017 |
0.447 |
| pilT | Pseudomonas stutzeri DSM 10701 |
46.588 |
94.134 |
0.439 |
| pilT | Acinetobacter baylyi ADP1 |
47.576 |
92.179 |
0.439 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.9 |
92.458 |
0.397 |
| pilU | Acinetobacter baylyi ADP1 |
39.535 |
96.089 |
0.38 |
| pilU | Vibrio cholerae strain A1552 |
39.157 |
92.737 |
0.363 |