Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | R3J34_RS07210 | Genome accession | NZ_CP136975 |
| Coordinates | 1505591..1506625 (+) | Length | 344 a.a. |
| NCBI ID | WP_004084948.1 | Uniprot ID | A0A060GZY3 |
| Organism | Xylella fastidiosa subsp. multiplex strain CFBP8070 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1500591..1511625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3J34_RS07190 (R3J34_07160) | - | 1501328..1502107 (+) | 780 | WP_038211354.1 | beta-ketoacyl synthase chain length factor | - |
| R3J34_RS07195 (R3J34_07165) | - | 1502104..1502928 (+) | 825 | WP_004084943.1 | glycosyltransferase family 2 protein | - |
| R3J34_RS07200 (R3J34_07170) | - | 1503545..1504372 (-) | 828 | WP_004084945.1 | glycosyltransferase family 2 protein | - |
| R3J34_RS07205 (R3J34_07175) | - | 1504757..1504969 (-) | 213 | WP_021358439.1 | hypothetical protein | - |
| R3J34_RS07210 (R3J34_07180) | pilT | 1505591..1506625 (+) | 1035 | WP_004084948.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| R3J34_RS07215 (R3J34_07185) | pilU | 1506780..1507910 (+) | 1131 | WP_004084950.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| R3J34_RS07220 (R3J34_07190) | - | 1508579..1509547 (-) | 969 | WP_004084952.1 | YafY family protein | - |
| R3J34_RS07225 (R3J34_07195) | - | 1510330..1511139 (+) | 810 | WP_021358437.1 | YdiY family protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38497.20 Da Isoelectric Point: 6.8843
>NTDB_id=893965 R3J34_RS07210 WP_004084948.1 1505591..1506625(+) (pilT) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNAHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
Nucleotide
Download Length: 1035 bp
>NTDB_id=893965 R3J34_RS07210 WP_004084948.1 1505591..1506625(+) (pilT) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTTGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCACAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAAACCCTTGACCAGCATTTG
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTGTCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTTGACCATAAGCAGGTGCAATCGCTAATTTACGACA
TCATGTCGGATAAGCAACGACGCGACTACGAGGAAGCCCTGGAGACGGATTTTTCGTTCGAAATCCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCCAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTCCGCAAACTCATTGAAGAACCGCAGGGGTTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATGCTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTCAACAA
AGCACTCAGCTCAGCACTGCGCGAAGATCCAGACATCATCTTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCAGCCGAAACTGGCCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCACAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAAACCCTTGACCAGCATTTG
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
75.872 |
100 |
0.759 |
| pilT | Pseudomonas aeruginosa PAK |
74.709 |
100 |
0.747 |
| pilT | Acinetobacter baumannii D1279779 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baylyi ADP1 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baumannii strain A118 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter nosocomialis M2 |
74.419 |
100 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
71.221 |
100 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
71.221 |
100 |
0.712 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.06 |
97.384 |
0.663 |
| pilT | Vibrio cholerae strain A1552 |
68.06 |
97.384 |
0.663 |
| pilT | Neisseria gonorrhoeae MS11 |
62.463 |
99.128 |
0.619 |
| pilT | Neisseria meningitidis 8013 |
62.17 |
99.128 |
0.616 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.986 |
100 |
0.491 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.698 |
100 |
0.407 |
| pilU | Vibrio cholerae strain A1552 |
39.826 |
100 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |