Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   R0135_RS07175 Genome accession   NZ_CP136864
Coordinates   1626649..1627110 (-) Length   153 a.a.
NCBI ID   WP_407349887.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1621649..1632110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS07160 (R0135_07130) ald 1622344..1623468 (-) 1125 WP_407349569.1 alanine dehydrogenase -
  R0135_RS07165 (R0135_07135) - 1623554..1624423 (-) 870 WP_407349570.1 glycosyltransferase family 2 protein -
  R0135_RS07170 (R0135_07140) - 1624514..1626523 (-) 2010 WP_407349571.1 hypothetical protein -
  R0135_RS07175 (R0135_07145) comP 1626649..1627110 (-) 462 WP_407349887.1 pilin Machinery gene
  R0135_RS07180 (R0135_07150) pilB 1627493..1629214 (+) 1722 WP_407349572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R0135_RS07185 (R0135_07155) pilC 1629271..1630488 (+) 1218 WP_407349573.1 type II secretion system F family protein Machinery gene
  R0135_RS07190 (R0135_07160) pilD 1630532..1631419 (+) 888 WP_407349574.1 prepilin peptidase Machinery gene
  R0135_RS07195 (R0135_07165) coaE 1631416..1632024 (+) 609 WP_407349575.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15864.22 Da        Isoelectric Point: 5.0647

>NTDB_id=893152 R0135_RS07175 WP_407349887.1 1626649..1627110(-) (comP) [Congregibacter variabilis strain IMCC43200]
MQRQQGFTLIELMIVIAIVGILAAIALPAYQDYTVRARMSEVLATAAEAKTTIAEYVAARGRMPTTAAQAGILESGFGDA
SFVATATFAGAGLTGVYTIAASNGEVARQQLGAAADMDITLTGTVDANSRRVTWVCAPVDTTLAKYLPASCRG

Nucleotide


Download         Length: 462 bp        

>NTDB_id=893152 R0135_RS07175 WP_407349887.1 1626649..1627110(-) (comP) [Congregibacter variabilis strain IMCC43200]
ATGCAAAGGCAGCAGGGTTTTACGCTGATCGAACTGATGATCGTTATTGCGATCGTTGGAATTTTGGCTGCGATTGCGCT
GCCTGCTTACCAGGATTACACGGTGCGAGCACGTATGTCGGAAGTTTTGGCAACCGCTGCTGAGGCAAAGACTACCATCG
CGGAATATGTGGCTGCCCGAGGTAGAATGCCGACTACGGCTGCTCAGGCAGGCATCCTGGAATCGGGCTTTGGAGATGCG
TCATTTGTGGCTACGGCTACATTCGCAGGCGCTGGTTTAACCGGCGTTTATACGATTGCAGCGTCCAATGGAGAAGTTGC
CCGGCAGCAGCTTGGCGCTGCAGCGGATATGGACATAACCCTTACCGGCACGGTAGACGCTAACTCTCGGAGAGTGACTT
GGGTTTGTGCTCCTGTAGACACTACTCTTGCTAAGTATCTCCCAGCTTCTTGCCGCGGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

44.97

100

0.497
  pilA Ralstonia pseudosolanacearum GMI1000

41.667

100

0.458
  pilA/pilA1 Eikenella corrodens VA1

43.871

100

0.444
  pilA2 Legionella pneumophila strain ERS1305867

45.033

98.693

0.444
  pilA2 Legionella pneumophila str. Paris

45.333

98.039

0.444
  pilE Neisseria gonorrhoeae MS11

37.576

100

0.405
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.355

100

0.399
  pilE Neisseria gonorrhoeae strain FA1090

37.195

100

0.399
  pilA Vibrio cholerae strain A1552

36.306

100

0.373
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.306

100

0.373
  pilA Vibrio cholerae C6706

36.306

100

0.373
  pilA Vibrio campbellii strain DS40M4

36.774

100

0.373
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.584

97.386

0.366