Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R0135_RS07190 Genome accession   NZ_CP136864
Coordinates   1630532..1631419 (+) Length   295 a.a.
NCBI ID   WP_407349574.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625532..1636419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS07175 (R0135_07145) comP 1626649..1627110 (-) 462 WP_407349887.1 pilin Machinery gene
  R0135_RS07180 (R0135_07150) pilB 1627493..1629214 (+) 1722 WP_407349572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R0135_RS07185 (R0135_07155) pilC 1629271..1630488 (+) 1218 WP_407349573.1 type II secretion system F family protein Machinery gene
  R0135_RS07190 (R0135_07160) pilD 1630532..1631419 (+) 888 WP_407349574.1 prepilin peptidase Machinery gene
  R0135_RS07195 (R0135_07165) coaE 1631416..1632024 (+) 609 WP_407349575.1 dephospho-CoA kinase -
  R0135_RS07200 (R0135_07170) mutT 1632080..1632511 (-) 432 WP_407349576.1 8-oxo-dGTP diphosphatase MutT -
  R0135_RS07205 (R0135_07175) argJ 1632520..1633758 (-) 1239 WP_407349577.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32110.77 Da        Isoelectric Point: 4.8199

>NTDB_id=893155 R0135_RS07190 WP_407349574.1 1630532..1631419(+) (pilD) [Congregibacter variabilis strain IMCC43200]
MTDAFMLSEFLNEYPLYFYLFTGALGLTVGSFLNVVILRLPEMMQREWRCDCRALLELEADSADNEDAKLSLSFPGSHCP
HCQHAIKPWENIPVISFLFLRGRCANCAAAISWRYPLVELATAAASVTVAFHIGAEPALLAYLLLTWSLIALAVIDFDTQ
LLPDDITLPLLWAGLLFNLFLGPVTPADAVLGAAAGYLLLWSIYWLFKFATGKEGMGYGDFKLLAALGAWLGWQSLPIII
LLSSAVGAVLGILIIVVRGKDRSHPLPFGPYLAAAGWISLLWGSALSAALFTGSL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=893155 R0135_RS07190 WP_407349574.1 1630532..1631419(+) (pilD) [Congregibacter variabilis strain IMCC43200]
ATGACCGATGCTTTCATGCTCAGCGAATTCCTGAACGAGTACCCCCTGTATTTCTATCTGTTTACCGGGGCTTTGGGCCT
CACTGTGGGCAGCTTTTTGAATGTCGTGATCTTGCGCCTGCCAGAAATGATGCAAAGAGAATGGCGCTGCGATTGCCGTG
CACTGTTAGAGCTGGAAGCCGACAGCGCCGACAATGAAGACGCAAAGTTATCGCTTTCGTTCCCCGGGTCGCATTGCCCT
CATTGCCAACATGCGATCAAGCCCTGGGAAAACATACCGGTAATCAGTTTCCTATTTTTACGTGGCCGCTGCGCGAATTG
CGCTGCAGCGATCAGCTGGCGATACCCCCTTGTAGAGCTGGCAACAGCCGCTGCATCGGTAACCGTCGCCTTTCACATTG
GGGCGGAGCCAGCCTTGCTTGCCTATCTGCTATTGACCTGGTCACTTATTGCGCTGGCCGTCATTGACTTCGATACGCAG
TTGCTTCCGGATGACATCACGCTACCGCTGCTTTGGGCAGGCTTACTCTTTAATCTGTTCCTGGGACCCGTTACACCTGC
CGATGCCGTTTTGGGCGCAGCAGCTGGGTATCTCTTACTGTGGTCAATCTATTGGCTGTTTAAGTTCGCCACGGGCAAAG
AAGGCATGGGCTATGGCGACTTTAAACTGCTTGCTGCCTTGGGTGCATGGCTTGGTTGGCAGAGCCTGCCCATCATCATT
TTATTGTCGTCTGCGGTAGGTGCCGTCTTGGGGATACTCATCATCGTAGTGAGAGGCAAGGACCGCTCTCACCCGCTACC
CTTTGGACCTTATCTTGCGGCGGCTGGCTGGATCAGCCTGCTTTGGGGCAGCGCGCTGTCCGCCGCGCTGTTCACCGGCT
CTTTGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(144-252)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.035

96.61

0.522
  pilD Vibrio campbellii strain DS40M4

52.083

97.627

0.508
  pilD Acinetobacter baumannii D1279779

49.818

93.22

0.464
  pilD Acinetobacter nosocomialis M2

49.818

93.22

0.464
  pilD Neisseria gonorrhoeae MS11

48.201

94.237

0.454