Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R0135_RS07185 Genome accession   NZ_CP136864
Coordinates   1629271..1630488 (+) Length   405 a.a.
NCBI ID   WP_407349573.1    Uniprot ID   -
Organism   Congregibacter variabilis strain IMCC43200     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624271..1635488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0135_RS07170 (R0135_07140) - 1624514..1626523 (-) 2010 WP_407349571.1 hypothetical protein -
  R0135_RS07175 (R0135_07145) comP 1626649..1627110 (-) 462 WP_407349887.1 pilin Machinery gene
  R0135_RS07180 (R0135_07150) pilB 1627493..1629214 (+) 1722 WP_407349572.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R0135_RS07185 (R0135_07155) pilC 1629271..1630488 (+) 1218 WP_407349573.1 type II secretion system F family protein Machinery gene
  R0135_RS07190 (R0135_07160) pilD 1630532..1631419 (+) 888 WP_407349574.1 prepilin peptidase Machinery gene
  R0135_RS07195 (R0135_07165) coaE 1631416..1632024 (+) 609 WP_407349575.1 dephospho-CoA kinase -
  R0135_RS07200 (R0135_07170) mutT 1632080..1632511 (-) 432 WP_407349576.1 8-oxo-dGTP diphosphatase MutT -
  R0135_RS07205 (R0135_07175) argJ 1632520..1633758 (-) 1239 WP_407349577.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43626.07 Da        Isoelectric Point: 7.9751

>NTDB_id=893154 R0135_RS07185 WP_407349573.1 1629271..1630488(+) (pilC) [Congregibacter variabilis strain IMCC43200]
MATTATSELFIWNGTDKNGRQTKGEINAPSQAMARAQLRQKGINPSSVRRKSKPLFSARKKPIKPADIAIFTRQMATMMK
AGVPLVQSFDIVGDGLENPSMKELVNGIKNDVSAGGGLALSLSKFPRYFDELFCSLVGAGESAGTLEVMLDRVATYKEKT
EQLKGKIKKALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLGLSDFMQEWWFIIVIGIVASVYAFK
ELRLKSKPFSDGVDRIMLKLPIFGGIVHDAVVARFSRTLATTFNAGVPLVDALESTAGAAGNAVFSVAILQIRDDVTTGS
TLYNSVKSTGLFPNMLLQMISIGEESGQLDEMLDKVATHYEEAVDNAVDSLSSLMEPMIMSVLGVLVGGLMIAMYLPIFM
LGSVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=893154 R0135_RS07185 WP_407349573.1 1629271..1630488(+) (pilC) [Congregibacter variabilis strain IMCC43200]
ATGGCGACGACGGCAACCAGCGAACTGTTTATCTGGAATGGCACCGATAAAAACGGCCGCCAAACGAAAGGAGAGATTAA
CGCGCCATCGCAAGCTATGGCGCGAGCCCAACTTCGACAAAAGGGAATCAATCCCAGCTCGGTGCGCCGCAAATCGAAGC
CCTTATTTAGCGCCCGAAAGAAACCTATTAAACCAGCTGATATCGCTATTTTCACTCGCCAAATGGCGACCATGATGAAA
GCTGGGGTCCCCTTGGTGCAAAGTTTCGACATCGTGGGTGACGGACTAGAGAACCCATCCATGAAGGAACTTGTAAACGG
CATCAAGAATGATGTCTCAGCGGGTGGCGGCCTGGCCTTGTCCCTGAGCAAATTCCCGCGTTACTTCGACGAGCTGTTCT
GCTCTCTGGTCGGCGCGGGTGAGTCTGCGGGTACGCTTGAAGTGATGCTTGACCGTGTGGCCACCTACAAGGAAAAAACC
GAGCAGTTAAAAGGCAAAATTAAAAAAGCACTGACCTATCCCACAGCTGTCATCGTAGTGGCGCTGGTGGTATCCGGCAT
TTTGCTTGTAAAGGTCGTTCCACAATTCGCGGAGACGTTCTCGAGCTTCGGCGCTGACCTACCCGCATTTACCTTGATGG
TATTGGGACTCTCTGATTTCATGCAGGAGTGGTGGTTCATTATCGTCATAGGCATTGTTGCTTCAGTTTATGCCTTCAAA
GAATTACGTCTAAAATCCAAGCCATTCAGCGATGGGGTAGATCGAATAATGCTGAAGCTTCCGATTTTTGGCGGCATCGT
TCACGACGCGGTAGTAGCACGGTTTTCCAGAACATTAGCCACAACGTTTAACGCCGGTGTGCCTCTGGTGGACGCTCTTG
AGTCTACAGCTGGTGCGGCGGGTAATGCCGTCTTTAGCGTAGCAATTTTGCAGATTCGGGACGACGTCACTACCGGGTCA
ACCCTCTACAACTCGGTAAAGAGCACCGGCTTGTTTCCCAATATGTTGCTACAGATGATCTCCATCGGAGAAGAGTCAGG
ACAGCTTGACGAAATGCTGGATAAGGTCGCCACACACTATGAAGAAGCTGTCGACAATGCCGTAGACAGTCTAAGCTCTC
TCATGGAGCCCATGATCATGTCGGTTCTTGGGGTCTTGGTAGGCGGCCTGATGATCGCCATGTACCTGCCGATCTTTATG
CTGGGATCAGTTATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.652

98.519

0.598
  pilC Acinetobacter baumannii D1279779

58.69

98.025

0.575
  pilC Acinetobacter baylyi ADP1

57.568

99.506

0.573
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria gonorrhoeae MS11

44.836

98.025

0.44
  pilG Neisseria meningitidis 44/76-A

44.836

98.025

0.44
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

40.657

97.778

0.398