Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   R1917_RS04845 Genome accession   NZ_CP136828
Coordinates   979069..980049 (+) Length   326 a.a.
NCBI ID   WP_071257863.1    Uniprot ID   -
Organism   Citrobacter koseri strain K2521     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 974069..985049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1917_RS04815 (R1917_04815) ansB 974580..975626 (+) 1047 WP_199971844.1 L-asparaginase 2 -
  R1917_RS04820 (R1917_04820) hemW 975745..976881 (-) 1137 WP_199971845.1 radical SAM family heme chaperone HemW -
  R1917_RS04825 (R1917_04825) - 976874..977467 (-) 594 WP_012135070.1 XTP/dITP diphosphatase -
  R1917_RS04830 (R1917_04830) yggU 977475..977765 (-) 291 WP_012135069.1 DUF167 family protein YggU -
  R1917_RS04835 (R1917_04835) - 977762..978328 (-) 567 WP_012135068.1 YggT family protein -
  R1917_RS04840 (R1917_04840) - 978347..979051 (-) 705 WP_049010785.1 YggS family pyridoxal phosphate-dependent enzyme -
  R1917_RS04845 (R1917_04845) pilT 979069..980049 (+) 981 WP_071257863.1 type IV pilus twitching motility protein PilT Machinery gene
  R1917_RS04850 (R1917_04850) ruvX 980199..980615 (-) 417 WP_071257864.1 Holliday junction resolvase RuvX -
  R1917_RS04855 (R1917_04855) - 980615..981178 (-) 564 WP_012135063.1 YqgE/AlgH family protein -
  R1917_RS04860 (R1917_04860) gshB 981355..982302 (-) 948 WP_317360501.1 glutathione synthase -
  R1917_RS04865 (R1917_04865) rsmE 982315..983046 (-) 732 WP_047463935.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  R1917_RS04870 (R1917_04870) endA 983124..983831 (-) 708 WP_012135060.1 deoxyribonuclease I -
  R1917_RS04875 (R1917_04875) - 983926..984423 (-) 498 WP_110493837.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35652.68 Da        Isoelectric Point: 6.8793

>NTDB_id=893037 R1917_RS04845 WP_071257863.1 979069..980049(+) (pilT) [Citrobacter koseri strain K2521]
MDMEEIVALSVKHNVSDLHLCNAWPARWRKRGKVEIAPFSSPNVEVLLSQWLNDAQRRAWQADGQLDFAVSLPGELRLRA
SAFHHEQGASLALRLLPTTCPQLDALQTPAALPALLGGENGLILVTGATGSGKSTTLAAMVEYLNQHLDGHILTLEDPIE
YRHTSQRCLIQQREVGVHCRSFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRSQLAGSLRAVLSQKLETDRQDGRVALFELLINTPAVGNLIREGKIHQLPGVIQTSQQAGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=893037 R1917_RS04845 WP_071257863.1 979069..980049(+) (pilT) [Citrobacter koseri strain K2521]
ATGGATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAACGCATGGCCTGCACG
CTGGCGTAAACGGGGAAAAGTGGAAATAGCCCCGTTTAGCAGCCCGAATGTCGAGGTTTTGCTGTCACAATGGCTTAACG
ACGCGCAGCGCCGGGCGTGGCAGGCGGATGGTCAGCTCGACTTTGCGGTGTCGCTGCCGGGCGAATTGCGGTTACGCGCC
AGCGCTTTTCATCACGAGCAGGGCGCATCGTTGGCGCTGCGGTTGCTGCCCACTACGTGCCCGCAACTGGACGCGCTCCA
GACGCCTGCCGCGCTACCCGCGCTCCTTGGCGGCGAGAACGGACTGATTCTGGTGACCGGGGCGACGGGAAGCGGGAAAT
CCACCACGCTGGCGGCAATGGTGGAATACCTCAACCAGCATCTCGATGGTCATATCCTGACGCTGGAAGATCCTATTGAG
TACCGCCATACCAGCCAGCGCTGCCTGATTCAGCAGCGGGAGGTTGGCGTACACTGCCGCTCCTTTGCCGCCGGGTTACG
CGCTGCGCTGCGTGAAGACCCGGATGTGATTTTATTAGGCGAACTGCGCGACAGTGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCGACGCTACATACGCGCGGCGCGGCACAGGCGGTAGAGCGGCTGGTTGACTCC
TTTCCGGCGCAGGAGAAAGATCCGGTACGCAGTCAACTTGCGGGCAGCCTGCGCGCCGTGTTGTCGCAGAAGCTGGAAAC
CGACAGGCAGGACGGACGCGTGGCGTTATTCGAACTGCTCATCAACACGCCAGCGGTTGGCAATCTTATTCGGGAGGGGA
AGATTCACCAGTTGCCCGGCGTTATTCAGACCAGCCAACAGGCGGGGATGCAGACGTTTGCCCAGAGTCTGCAACAGCGG
CAGGCGCAGGGCAGGCTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(52-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

51.07

100

0.512
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.07

100

0.512
  pilT Neisseria meningitidis 8013

49.39

100

0.497
  pilT Neisseria gonorrhoeae MS11

49.085

100

0.494
  pilT Acinetobacter baylyi ADP1

47.401

100

0.475
  pilT Pseudomonas aeruginosa PAK

47.095

100

0.472
  pilT Pseudomonas stutzeri DSM 10701

47.095

100

0.472
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Legionella pneumophila strain ERS1305867

46.584

98.773

0.46
  pilT Legionella pneumophila strain Lp02

46.584

98.773

0.46
  pilU Pseudomonas stutzeri DSM 10701

40.909

100

0.414
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.752

98.773

0.393
  pilU Acinetobacter baylyi ADP1

38.58

99.387

0.383