Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   RYQ61_RS05595 Genome accession   NZ_CP136799
Coordinates   1073922..1074434 (+) Length   170 a.a.
NCBI ID   WP_247929433.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068922..1079434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS05570 (RYQ61_05570) - 1070419..1071174 (-) 756 WP_003077557.1 hypothetical protein -
  RYQ61_RS05575 (RYQ61_05575) - 1071322..1072383 (+) 1062 WP_021002444.1 Xaa-Pro peptidase family protein -
  RYQ61_RS05580 (RYQ61_05580) efp 1072442..1073002 (+) 561 WP_003026309.1 elongation factor P -
  RYQ61_RS05585 (RYQ61_05585) - 1073113..1073502 (+) 390 WP_003074522.1 Asp23/Gls24 family envelope stress response protein -
  RYQ61_RS05590 (RYQ61_05590) nusB 1073495..1073920 (+) 426 WP_003077471.1 transcription antitermination factor NusB -
  RYQ61_RS05595 (RYQ61_05595) comR/comR2 1073922..1074434 (+) 513 WP_247929433.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 21057.35 Da        Isoelectric Point: 9.8034

>NTDB_id=892724 RYQ61_RS05595 WP_247929433.1 1073922..1074434(+) (comR/comR2) [Streptococcus intermedius strain XH2169]
MSRNEQRKKRARSPLFYKLYEKVRGIVLKCRREYYVHLWDLSDWDQEGMMVLYELVSRHPYLVEEEAHLYVYYKTKFRNH
IKDILRKQESQKRKLDRQVYEEVSEIGYKLSLKGLYLDELVILRDQLKSYQKQLSPAKQEQYERLLADERFKGRQAMLRE
LRTYLKDYEM

Nucleotide


Download         Length: 513 bp        

>NTDB_id=892724 RYQ61_RS05595 WP_247929433.1 1073922..1074434(+) (comR/comR2) [Streptococcus intermedius strain XH2169]
ATTTCAAGAAATGAACAAAGAAAAAAGAGGGCGCGAAGTCCTCTTTTTTATAAGTTATATGAGAAAGTAAGGGGAATTGT
GCTGAAGTGTCGACGGGAATATTATGTCCATCTGTGGGATCTAAGCGATTGGGACCAAGAAGGGATGATGGTCTTGTATG
AGTTGGTAAGTCGCCACCCCTATTTAGTAGAGGAAGAAGCCCATCTCTATGTCTACTATAAGACAAAGTTTCGGAATCAC
ATAAAGGATATTCTGCGCAAACAAGAAAGTCAAAAGCGCAAACTGGATCGCCAAGTGTATGAAGAGGTAAGTGAGATTGG
GTACAAGTTAAGTCTGAAAGGTCTGTATCTAGACGAGTTGGTAATACTCCGCGATCAATTAAAGTCCTATCAAAAGCAAC
TGAGTCCCGCCAAGCAAGAGCAGTATGAGCGGTTACTGGCAGATGAAAGGTTCAAAGGACGCCAAGCGATGCTTCGAGAG
TTACGAACCTACTTAAAAGACTATGAGATGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

59.477

90

0.535
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

59.477

90

0.535
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

53.846

91.765

0.494
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

52.564

91.765

0.482
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

51.923

91.765

0.476
  comX/comX2 Streptococcus pneumoniae Rx1

52.941

90

0.476
  comX/comX2 Streptococcus pneumoniae D39

52.941

90

0.476
  comX/comX1 Streptococcus pneumoniae D39

52.941

90

0.476
  comX/comX2 Streptococcus pneumoniae R6

52.941

90

0.476
  comX/comX1 Streptococcus pneumoniae R6

52.941

90

0.476
  comX/comX1 Streptococcus pneumoniae Rx1

52.941

90

0.476
  comX/comX1 Streptococcus pneumoniae TIGR4

52.288

90

0.471
  comX/comX2 Streptococcus pneumoniae TIGR4

52.288

90

0.471
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

51.282

91.765

0.471
  comX/sigX Streptococcus suis P1/7

49.673

90

0.447
  comX/sigX Streptococcus suis D9

49.673

90

0.447
  comX/sigX Streptococcus suis isolate S10

49.673

90

0.447
  comX/sigX Streptococcus mutans UA159

49.673

90

0.447
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

44.667

88.235

0.394
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

44.667

88.235

0.394
  comX Streptococcus salivarius SK126

43.226

91.176

0.394
  comX Streptococcus thermophilus LMG 18311

43.226

91.176

0.394
  comX Streptococcus thermophilus LMD-9

43.226

91.176

0.394
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

44.966

87.647

0.394
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

44.966

87.647

0.394
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

44.966

87.647

0.394
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

44.966

87.647

0.394
  comX/sigX Streptococcus salivarius strain HSISS4

42.581

91.176

0.388