NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	R1T46_RS10435	Genome accession	NZ_CP136693
Coordinates	2256233..2256691 (+)	Length	152 a.a.
NCBI ID	WP_317308192.1	Uniprot ID	-
Organism	Marinobacter salarius strain CI.11.F.A3
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2251233..2261691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1T46_RS10415 (R1T46_10415)	coaE	2251434..2252036 (-)	603	WP_317308188.1	dephospho-CoA kinase	-
R1T46_RS10420 (R1T46_10420)	pilD	2252037..2252912 (-)	876	WP_317308189.1	A24 family peptidase	Machinery gene
R1T46_RS10425 (R1T46_10425)	pilC	2252987..2254204 (-)	1218	WP_317308190.1	type II secretion system F family protein	Machinery gene
R1T46_RS10430 (R1T46_10430)	pilB	2254207..2255922 (-)	1716	WP_317308191.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R1T46_RS10435 (R1T46_10435)	pilA	2256233..2256691 (+)	459	WP_317308192.1	pilin	Machinery gene
R1T46_RS10440 (R1T46_10440)	-	2257901..2258329 (+)	429	WP_317308193.1	pilin	-
R1T46_RS10445 (R1T46_10445)	-	2258375..2260345 (+)	1971	WP_317308194.1	hypothetical protein	-
R1T46_RS10450 (R1T46_10450)	-	2260366..2261232 (+)	867	WP_317308195.1	glycosyltransferase family 2 protein	-

Sequence

Protein

Download Length: 152 a.a. Molecular weight: 15789.74 Da Isoelectric Point: 4.3307

                                >NTDB_id=892492 R1T46_RS10435 WP_317308192.1 2256233..2256691(+) (pilA) [Marinobacter salarius strain CI.11.F.A3]

MKKVQQGFTLIELMIVVAIIGILAAVAIPAYQDYTIRAQVSEGLSLASGAKTAMAEFYNQTGRFPTGTNANASLGLSTNT

DIDGSYVSQLDAGTNTGGVIEVTYGNDVNTQIENAVLAISAVTSAGSIQWTCRDGGSGATSLEAKYLPTNCR

Nucleotide

Download Length: 459 bp

                                >NTDB_id=892492 R1T46_RS10435 WP_317308192.1 2256233..2256691(+) (pilA) [Marinobacter salarius strain CI.11.F.A3]

ATGAAAAAAGTTCAACAGGGTTTTACTTTGATCGAACTGATGATCGTTGTAGCGATCATTGGTATTCTGGCGGCGGTTGC

TATTCCGGCTTATCAGGACTACACCATTCGTGCGCAGGTTTCTGAAGGTCTGAGTCTTGCATCCGGTGCGAAGACTGCTA

TGGCTGAATTTTATAACCAAACTGGGCGCTTCCCGACTGGCACGAATGCCAACGCATCTCTCGGCCTCTCAACTAATACT

GATATTGATGGCTCGTACGTATCACAACTTGATGCGGGCACCAACACAGGAGGAGTTATTGAGGTCACGTATGGCAATGA

TGTGAACACTCAGATCGAGAACGCCGTTCTGGCAATCTCAGCGGTTACTTCGGCCGGTAGTATTCAGTGGACTTGCCGAG

ACGGTGGTTCTGGCGCTACTTCGCTTGAAGCTAAGTACCTGCCGACTAACTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-152)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Ralstonia pseudosolanacearum GMI1000	44.706	100	0.5
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	37.895	100	0.474
pilE	Neisseria gonorrhoeae MS11	41.667	100	0.461
pilE	Neisseria gonorrhoeae strain FA1090	42.331	100	0.454
pilA2	Legionella pneumophila strain ERS1305867	43.243	97.368	0.421
pilA2	Legionella pneumophila str. Paris	43.243	97.368	0.421
pilA/pilA1	Eikenella corrodens VA1	37.209	100	0.421
comP	Acinetobacter baylyi ADP1	40.789	100	0.408
pilA	Vibrio campbellii strain DS40M4	35.948	100	0.362
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	34.375	100	0.362
pilA	Vibrio cholerae strain A1552	34.375	100	0.362
pilA	Vibrio cholerae C6706	34.375	100	0.362
pilA	Acinetobacter baumannii strain A118	37.162	97.368	0.362

Detailed information NTG0892492