Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAHH81_RS05470 Genome accession   NZ_CP152418
Coordinates   1082167..1083834 (-) Length   555 a.a.
NCBI ID   WP_000923569.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077167..1088834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH81_RS05440 (AAHH81_05425) - 1077495..1078298 (-) 804 Protein_1073 IS5 family transposase -
  AAHH81_RS05445 (AAHH81_05430) - 1078306..1078608 (-) 303 WP_000590582.1 PTS sugar transporter subunit IIB -
  AAHH81_RS05450 (AAHH81_05435) - 1078646..1079122 (-) 477 WP_000242183.1 PTS sugar transporter subunit IIA -
  AAHH81_RS05455 (AAHH81_05440) - 1079302..1079454 (+) 153 WP_000693359.1 hypothetical protein -
  AAHH81_RS05460 (AAHH81_05445) lepA 1079535..1081358 (-) 1824 WP_001047216.1 translation elongation factor 4 -
  AAHH81_RS05465 (AAHH81_05450) - 1081437..1082165 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  AAHH81_RS05470 (AAHH81_05455) recN 1082167..1083834 (-) 1668 WP_000923569.1 DNA repair protein RecN Machinery gene
  AAHH81_RS05475 (AAHH81_05460) - 1083841..1084272 (-) 432 WP_001034415.1 arginine repressor -
  AAHH81_RS05480 (AAHH81_05465) - 1084265..1085080 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  AAHH81_RS05485 (AAHH81_05470) - 1085073..1085948 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  AAHH81_RS05490 (AAHH81_05475) - 1085945..1086157 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AAHH81_RS05495 (AAHH81_05480) xseA 1086135..1087475 (-) 1341 WP_000417462.1 exodeoxyribonuclease VII large subunit -
  AAHH81_RS05500 (AAHH81_05485) udk 1087603..1088241 (-) 639 WP_001181378.1 uridine kinase -
  AAHH81_RS05505 (AAHH81_05490) - 1088349..1088651 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62804.23 Da        Isoelectric Point: 4.6211

>NTDB_id=892492 AAHH81_RS05470 WP_000923569.1 1082167..1083834(-) (recN) [Streptococcus pneumoniae strain 20234287]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEADIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=892492 AAHH81_RS05470 WP_000923569.1 1082167..1083834(-) (recN) [Streptococcus pneumoniae strain 20234287]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGACATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTTTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438