Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AAHH81_RS05275 Genome accession   NZ_CP152418
Coordinates   1042160..1043230 (+) Length   356 a.a.
NCBI ID   WP_061813620.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234287     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037160..1048230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH81_RS05260 (AAHH81_05245) ylqF 1038394..1039245 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  AAHH81_RS05265 (AAHH81_05250) - 1039232..1040014 (+) 783 WP_061813621.1 ribonuclease HII -
  AAHH81_RS05270 (AAHH81_05255) - 1040026..1041576 (+) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  AAHH81_RS05275 (AAHH81_05260) xerS 1042160..1043230 (+) 1071 WP_061813620.1 tyrosine recombinase XerS Machinery gene
  AAHH81_RS05280 (AAHH81_05265) - 1043303..1044292 (-) 990 WP_369916774.1 lipoate--protein ligase -
  AAHH81_RS05285 (AAHH81_05270) lpdA 1044356..1046059 (-) 1704 WP_001162941.1 dihydrolipoyl dehydrogenase -
  AAHH81_RS05290 (AAHH81_05275) - 1046105..1047148 (-) 1044 WP_061813619.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41161.17 Da        Isoelectric Point: 9.6220

>NTDB_id=892489 AAHH81_RS05275 WP_061813620.1 1042160..1043230(+) (xerS) [Streptococcus pneumoniae strain 20234287]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKSYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=892489 AAHH81_RS05275 WP_061813620.1 1042160..1043230(+) (xerS) [Streptococcus pneumoniae strain 20234287]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAATCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997