Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R1T46_RS10420 Genome accession   NZ_CP136693
Coordinates   2252037..2252912 (-) Length   291 a.a.
NCBI ID   WP_317308189.1    Uniprot ID   -
Organism   Marinobacter salarius strain CI.11.F.A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2247037..2257912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T46_RS10395 (R1T46_10395) - 2247424..2247978 (-) 555 WP_317308185.1 YfaZ family outer membrane protein -
  R1T46_RS10400 (R1T46_10400) yacG 2248080..2248268 (-) 189 WP_317308186.1 DNA gyrase inhibitor YacG -
  R1T46_RS10405 (R1T46_10405) - 2248289..2250649 (-) 2361 WP_407070164.1 response regulator -
  R1T46_RS10410 (R1T46_10410) tsaA 2250682..2251428 (-) 747 WP_317308187.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  R1T46_RS10415 (R1T46_10415) coaE 2251434..2252036 (-) 603 WP_317308188.1 dephospho-CoA kinase -
  R1T46_RS10420 (R1T46_10420) pilD 2252037..2252912 (-) 876 WP_317308189.1 A24 family peptidase Machinery gene
  R1T46_RS10425 (R1T46_10425) pilC 2252987..2254204 (-) 1218 WP_317308190.1 type II secretion system F family protein Machinery gene
  R1T46_RS10430 (R1T46_10430) pilB 2254207..2255922 (-) 1716 WP_317308191.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R1T46_RS10435 (R1T46_10435) pilA 2256233..2256691 (+) 459 WP_317308192.1 pilin Machinery gene

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32072.18 Da        Isoelectric Point: 5.6833

>NTDB_id=892489 R1T46_RS10420 WP_317308189.1 2252037..2252912(-) (pilD) [Marinobacter salarius strain CI.11.F.A3]
MVSFDTFLATPWLLYIVVVFISLCIGSFLNVVILRLPKMMQQDWRCQCEDFLELPDGQRKSDEPITLSKPASTCPSCGHK
IRAWENIPVISYLILGGKCASCKSGISPRYPIIEAITALFSVVTVLVIGPTEAALWSLLLVWVLIALTVIDFDTQLLPDS
MTLPLMWLGLILNYFGVLTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWELLPAVILLSSV
VGAIVGISLMVFRKHGREVPIPFGPYLAAAGLLCLWFGTEIQAAWYAYLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=892489 R1T46_RS10420 WP_317308189.1 2252037..2252912(-) (pilD) [Marinobacter salarius strain CI.11.F.A3]
ATGGTTTCCTTTGATACGTTTCTGGCCACTCCCTGGCTTCTCTATATCGTTGTTGTCTTTATTTCCCTCTGCATTGGTAG
CTTCCTTAATGTAGTGATACTTCGCCTGCCAAAGATGATGCAGCAGGATTGGCGTTGCCAGTGTGAGGATTTCCTGGAAC
TTCCTGATGGGCAGCGTAAGAGTGATGAGCCGATCACGCTCTCCAAGCCGGCTTCCACCTGCCCGTCCTGTGGCCACAAG
ATCCGCGCATGGGAGAACATCCCGGTGATCAGTTACCTGATTTTGGGTGGCAAATGTGCTTCCTGCAAATCCGGGATTTC
GCCGCGTTACCCGATTATTGAAGCGATTACCGCCCTGTTTTCGGTGGTGACCGTTCTGGTCATAGGGCCGACAGAAGCTG
CTCTTTGGTCGTTGTTGCTGGTGTGGGTGTTGATCGCGCTGACGGTGATCGATTTTGACACCCAGCTGCTGCCAGACAGC
ATGACTCTGCCCCTGATGTGGCTGGGGCTGATTCTGAACTATTTCGGCGTGTTGACAGATTTCAGCAGTGCCTTCTGGGG
CGCGGTGGCAGGTTATCTGTCGCTTTGGTCTGTGTACTGGCTGTTCAAACTGGTAACGGGCAAGGAAGGCATGGGCCATG
GCGATTTCAAGTTGTTGGCCGCGCTGGGCGCCTGGCTGGGCTGGGAGTTGCTGCCAGCGGTGATTTTGTTGTCGTCTGTC
GTTGGTGCCATTGTGGGGATCAGTTTGATGGTGTTCCGCAAGCACGGGCGTGAGGTGCCGATTCCGTTCGGGCCCTATTT
AGCGGCGGCGGGGCTGCTGTGCCTCTGGTTTGGTACCGAGATTCAGGCGGCCTGGTATGCCTACTTGGGGGTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

56.25

93.471

0.526
  pilD Acinetobacter nosocomialis M2

55.882

93.471

0.522
  pilD Vibrio cholerae strain A1552

52.098

98.282

0.512
  pilD Vibrio campbellii strain DS40M4

50.704

97.595

0.495
  pilD Neisseria gonorrhoeae MS11

50.199

86.254

0.433