Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R1T46_RS10425 Genome accession   NZ_CP136693
Coordinates   2252987..2254204 (-) Length   405 a.a.
NCBI ID   WP_317308190.1    Uniprot ID   -
Organism   Marinobacter salarius strain CI.11.F.A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2247987..2259204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T46_RS10400 (R1T46_10400) yacG 2248080..2248268 (-) 189 WP_317308186.1 DNA gyrase inhibitor YacG -
  R1T46_RS10405 (R1T46_10405) - 2248289..2250649 (-) 2361 WP_407070164.1 response regulator -
  R1T46_RS10410 (R1T46_10410) tsaA 2250682..2251428 (-) 747 WP_317308187.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  R1T46_RS10415 (R1T46_10415) coaE 2251434..2252036 (-) 603 WP_317308188.1 dephospho-CoA kinase -
  R1T46_RS10420 (R1T46_10420) pilD 2252037..2252912 (-) 876 WP_317308189.1 A24 family peptidase Machinery gene
  R1T46_RS10425 (R1T46_10425) pilC 2252987..2254204 (-) 1218 WP_317308190.1 type II secretion system F family protein Machinery gene
  R1T46_RS10430 (R1T46_10430) pilB 2254207..2255922 (-) 1716 WP_317308191.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R1T46_RS10435 (R1T46_10435) pilA 2256233..2256691 (+) 459 WP_317308192.1 pilin Machinery gene
  R1T46_RS10440 (R1T46_10440) - 2257901..2258329 (+) 429 WP_317308193.1 pilin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44252.19 Da        Isoelectric Point: 9.7270

>NTDB_id=892490 R1T46_RS10425 WP_317308190.1 2252987..2254204(-) (pilC) [Marinobacter salarius strain CI.11.F.A3]
MAEKAQKLQAFVWEGKDRKGSKTKGEISGTNLALVKAQLRKQGIIPDRVKKKPKPLFGGSKKITPFDIAMFTRQMATMMK
AGVPLVQSFDIVTDGLENQGLRDLIAAVRNDVASGTSFANALRRHPKHFDNLYCNLVDSGEKAGALEQMLDRIAMYLEKT
ETLKKKVKKAMTYPIAVVVVAIVVTAILLVKVVPQFESLFQGFGADLPVFTQFIIGISEWMQKWWFIVLLGIVGSVFLFK
EAKKKSLKFSDFVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFASGVPLVDALDSVAGATGNAVYRDAVMKIKDDVSSGT
QLQASMKTTGVFPVMAVQLTSIGEESGNLDEMLEKVADHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=892490 R1T46_RS10425 WP_317308190.1 2252987..2254204(-) (pilC) [Marinobacter salarius strain CI.11.F.A3]
ATGGCAGAAAAAGCACAGAAACTTCAGGCGTTCGTCTGGGAAGGCAAAGACCGCAAGGGCAGCAAAACCAAGGGCGAGAT
ATCCGGTACCAACCTTGCGTTGGTTAAAGCCCAATTGCGTAAACAGGGCATTATTCCGGACAGGGTCAAGAAGAAACCGA
AACCATTGTTTGGCGGCAGCAAGAAGATTACACCGTTCGATATTGCCATGTTTACCCGGCAGATGGCGACGATGATGAAG
GCGGGCGTGCCGTTGGTACAGAGCTTCGATATTGTTACCGATGGCTTGGAAAACCAAGGGCTGAGAGACTTGATTGCGGC
TGTCAGGAACGATGTAGCTTCAGGTACCAGTTTCGCCAATGCCCTGCGCCGGCACCCAAAGCATTTCGACAACCTTTACT
GCAACCTGGTGGATTCTGGCGAAAAGGCCGGTGCGCTGGAGCAAATGCTTGACCGGATTGCGATGTATCTTGAGAAAACG
GAAACCCTCAAGAAGAAGGTCAAGAAGGCCATGACCTACCCCATCGCTGTTGTGGTGGTTGCGATCGTGGTAACGGCTAT
TTTGCTGGTTAAGGTGGTACCGCAGTTTGAGAGCCTGTTCCAGGGCTTTGGCGCGGACCTGCCTGTATTCACTCAGTTCA
TCATTGGCATATCAGAATGGATGCAAAAATGGTGGTTTATTGTACTTCTGGGCATAGTTGGCTCAGTTTTCCTCTTCAAA
GAAGCCAAGAAAAAATCACTGAAGTTCTCAGATTTTGTTGATAAATATGTACTAAAACTTCCCGTGGTTGGTGAAATACT
GGATAAGTCTGCCGTCGCAAAGTTTGGCCGGGTACTCTCAACTACCTTCGCCTCTGGTGTTCCCCTGGTAGATGCCCTTG
ATTCGGTTGCTGGTGCCACCGGTAACGCGGTTTACCGTGATGCCGTCATGAAAATCAAGGATGACGTATCCAGCGGCACG
CAGCTTCAGGCCTCCATGAAGACTACTGGCGTATTTCCGGTAATGGCCGTACAGCTGACTTCTATTGGTGAGGAATCCGG
TAATCTGGATGAGATGCTGGAGAAGGTAGCTGACCATTATGAGGGCGTTGTTGACGATATGGTTGATAACCTGACCGCCC
TGATGGAGCCGATGATTATGGCGGTTCTGGGTGTTCTGGTGGGTGGCCTTATCATCGGTATGTACCTGCCGATCTTCCAG
ATGGGGCAGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.667

100

0.667
  pilC Acinetobacter baylyi ADP1

57.635

100

0.578
  pilC Acinetobacter baumannii D1279779

57.531

100

0.575
  pilC Legionella pneumophila strain ERS1305867

52.956

100

0.531
  pilG Neisseria gonorrhoeae MS11

41.481

100

0.415
  pilG Neisseria meningitidis 44/76-A

41.235

100

0.412
  pilC Vibrio campbellii strain DS40M4

38.424

100

0.385
  pilC Vibrio cholerae strain A1552

38.025

100

0.38
  pilC Thermus thermophilus HB27

37.093

98.519

0.365