Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RGE70_RS16610 Genome accession   NZ_CP136522
Coordinates   3882550..3884070 (+) Length   506 a.a.
NCBI ID   WP_310472550.1    Uniprot ID   -
Organism   Shewanella sp. DAU334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3877550..3889070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGE70_RS16600 (RGE70_16590) - 3879518..3880261 (+) 744 WP_310472548.1 TetR/AcrR family transcriptional regulator -
  RGE70_RS16605 (RGE70_16595) - 3880555..3882324 (+) 1770 WP_310472549.1 aryl-sulfate sulfotransferase -
  RGE70_RS16610 (RGE70_16600) comM 3882550..3884070 (+) 1521 WP_310472550.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RGE70_RS16615 (RGE70_16605) - 3884188..3885093 (+) 906 WP_310472551.1 acyltransferase -
  RGE70_RS16620 (RGE70_16610) - 3885099..3886055 (+) 957 WP_310472552.1 acyltransferase -
  RGE70_RS16625 (RGE70_16615) - 3886145..3887233 (-) 1089 WP_310472553.1 branched-chain amino acid aminotransferase -
  RGE70_RS16630 (RGE70_16620) - 3887867..3888658 (-) 792 WP_310473007.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54937.01 Da        Isoelectric Point: 7.0316

>NTDB_id=891342 RGE70_RS16610 WP_310472550.1 3882550..3884070(+) (comM) [Shewanella sp. DAU334]
MALACVATRASSGVDAPAVTVEVHLSNGLPAFSLVGLPEASVKEAKERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQIPLESIERHEFVGELALSGHVRYCSGILPVIVAASQADNRLVMPIDNRADAELVAFEKVLFATHL
QSLAAYLHGQSELPSIDLGLEWITPNITLGEHCLSEVIGQQHAKQALEIAAAGNHNLLMLGSPGTGKTMLASRMMQLLPP
LSYEEALEVAAIHSVAGQTLQQQQFYQRPFRSPHHTSSAISLVGGGAVPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVSISRAAAKLNFLCRFQLIAAMNPSPCGDVDNARANVDQIQRYLSRLSGPFLDRFDITIDVPKLPLGALNSTDN
QAETSEVIAKRVLAARETQLARSGTLNSELNGKQLKNEARFHADDLLFLEQSVNRLGLSVRSYHRLQRVARTIADLQQEQ
NVSRAHIAQALGYRAIDRLLASLKQN

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=891342 RGE70_RS16610 WP_310472550.1 3882550..3884070(+) (comM) [Shewanella sp. DAU334]
ATGGCATTAGCCTGTGTTGCGACCCGTGCCAGCAGTGGCGTCGACGCGCCAGCGGTCACTGTTGAAGTACACCTAAGCAA
TGGCTTACCGGCATTTTCGCTGGTAGGTCTTCCGGAAGCATCGGTTAAAGAAGCCAAAGAACGCGTACGTAGCGCGTTAA
TTAACGCAGGCTTCGAGTTTCCAATGCGCCGCATCACCGTTAATTTAGCGCCAGCAGATCTACCCAAACAAGGCGGTCGC
TATGACCTGCCTATCGCCATTGGTATTTTGGCGGCCTCAAAACAAATCCCCCTGGAGTCGATTGAACGACATGAGTTTGT
CGGCGAGCTTGCGTTGTCTGGCCATGTTCGTTATTGCTCGGGCATATTGCCGGTTATTGTCGCAGCCAGCCAAGCTGACA
ATCGCTTGGTGATGCCGATTGATAACCGCGCAGATGCGGAGCTTGTTGCATTTGAAAAAGTATTATTTGCCACACACTTG
CAGTCATTGGCCGCATACCTCCATGGCCAGTCAGAGCTACCGAGCATTGACCTCGGGTTAGAGTGGATAACCCCAAACAT
TACCCTTGGCGAGCATTGTTTGAGCGAGGTGATTGGACAGCAGCATGCCAAACAAGCGCTAGAAATTGCTGCCGCAGGAA
ACCATAACCTGCTAATGCTTGGCAGCCCAGGTACCGGCAAGACTATGTTGGCTAGCCGCATGATGCAACTACTACCGCCA
TTGAGCTATGAAGAGGCGCTTGAAGTTGCGGCAATTCATTCAGTTGCGGGGCAAACTTTGCAGCAACAACAGTTTTACCA
ACGGCCTTTTCGCAGTCCACATCATACAAGTTCGGCCATTTCTTTAGTGGGCGGTGGCGCCGTCCCTAAGCCGGGAGAAA
TATCACTTGCGCACCGTGGCGTGCTATTTTTAGATGAAGTGGCTGAGTTTCCAAGAAAAGTACTCGACTGCTTACGTGAA
CCAATGGAAACCGGTGAGGTAAGCATTTCGCGGGCAGCAGCAAAGCTTAATTTTTTGTGCCGATTCCAGTTAATTGCAGC
AATGAACCCCAGCCCTTGTGGCGACGTAGATAACGCAAGGGCCAATGTTGATCAAATTCAACGCTACCTATCTAGGCTTT
CGGGCCCTTTTTTAGACCGTTTTGACATTACCATTGATGTGCCAAAACTGCCGTTAGGCGCGCTCAACTCAACCGATAAT
CAAGCAGAAACCAGTGAGGTGATAGCCAAACGTGTATTGGCGGCACGAGAAACACAGCTGGCTCGCTCGGGGACACTTAA
TAGTGAGCTCAACGGAAAACAGTTAAAAAATGAAGCCCGCTTTCATGCAGATGACTTATTGTTTTTGGAGCAAAGCGTCA
ATCGCTTAGGCTTATCGGTACGTAGCTATCACCGCTTACAACGCGTTGCGCGTACGATTGCAGACTTACAACAAGAGCAA
AATGTGTCGCGCGCTCATATTGCACAAGCGCTTGGATACCGAGCTATAGACCGCTTACTCGCCAGTCTAAAACAGAATTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.832

100

0.549
  comM Glaesserella parasuis strain SC1401

54.635

100

0.547
  comM Vibrio campbellii strain DS40M4

53.649

100

0.538
  comM Legionella pneumophila str. Paris

49.098

98.617

0.484
  comM Legionella pneumophila strain ERS1305867

49.098

98.617

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435