Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   RRL10_RS04150 Genome accession   NZ_CP135450
Coordinates   844463..845443 (+) Length   326 a.a.
NCBI ID   WP_315689851.1    Uniprot ID   -
Organism   Citrobacter freundii strain isolateL     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 839463..850443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL10_RS04120 (RRL10_04120) ansB 839977..841023 (+) 1047 WP_044713806.1 L-asparaginase 2 -
  RRL10_RS04125 (RRL10_04125) hemW 841139..842275 (-) 1137 WP_106902244.1 radical SAM family heme chaperone HemW -
  RRL10_RS04130 (RRL10_04130) - 842268..842861 (-) 594 WP_057102130.1 XTP/dITP diphosphatase -
  RRL10_RS04135 (RRL10_04135) yggU 842869..843159 (-) 291 WP_003027101.1 DUF167 family protein YggU -
  RRL10_RS04140 (RRL10_04140) - 843156..843722 (-) 567 WP_003825417.1 YggT family protein -
  RRL10_RS04145 (RRL10_04145) - 843741..844445 (-) 705 WP_003838215.1 YggS family pyridoxal phosphate-dependent enzyme -
  RRL10_RS04150 (RRL10_04150) pilT 844463..845443 (+) 981 WP_315689851.1 type IV pilus twitching motility protein PilT Machinery gene
  RRL10_RS04155 (RRL10_04155) ruvX 845440..845856 (-) 417 WP_134216465.1 Holliday junction resolvase RuvX -
  RRL10_RS04160 (RRL10_04160) - 845856..846419 (-) 564 WP_003027086.1 YqgE/AlgH family protein -
  RRL10_RS04165 (RRL10_04165) gshB 846531..847478 (-) 948 WP_003027083.1 glutathione synthase -
  RRL10_RS04170 (RRL10_04170) rsmE 847498..848229 (-) 732 WP_003846360.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RRL10_RS04175 (RRL10_04175) endA 848304..849011 (-) 708 WP_315689852.1 deoxyribonuclease I -
  RRL10_RS04180 (RRL10_04180) - 849106..849603 (-) 498 WP_003838223.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35957.07 Da        Isoelectric Point: 6.4255

>NTDB_id=886675 RRL10_RS04150 WP_315689851.1 844463..845443(+) (pilT) [Citrobacter freundii strain isolateL]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRRGKVESAPFTTPDVENLLMCWLSEQQQVQLQEQGQIDFAVTLTDSRRLRA
SAFVHQQGTSLALRLLPLDCPHLDDLQPPAVIPELLHSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYTSRRCLIQQREVGAHCASFAAGLRGALREDPDVILLGELRDVETIRLALMAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=886675 RRL10_RS04150 WP_315689851.1 844463..845443(+) (pilT) [Citrobacter freundii strain isolateL]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCCGCGCG
TTGGCGCAGGCGTGGAAAAGTCGAAAGCGCACCGTTTACCACGCCTGACGTAGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTTGCAGGAGCAAGGGCAGATTGATTTTGCCGTTACCCTGACGGACTCCCGGCGGCTGCGCGCC
AGCGCATTTGTCCATCAGCAGGGAACCTCGCTGGCGCTAAGACTGCTACCGCTGGATTGTCCTCATTTAGACGATCTTCA
GCCTCCCGCGGTCATACCTGAACTGCTTCACAGTGAAAATGGGTTGATTCTGGTGACAGGCGCTACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGGCACATTCTGACGCTGGAAGATCCTATTGAA
TATCGCTACACCAGCCGACGTTGTCTGATTCAACAGCGGGAGGTGGGCGCACACTGCGCCTCTTTCGCCGCCGGTTTGCG
CGGTGCGCTACGCGAAGATCCCGACGTTATTTTGCTGGGCGAGCTGCGCGACGTGGAAACCATTCGGCTGGCATTAATGG
CGGCGGAAACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCGCAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCAACAGAGAAAGATCCTGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTTCTTTCGCAAAAACTTGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAACTACTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACATTTGCACAAAGTTTGCAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(64-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.235

100

0.494
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.235

100

0.494
  pilT Neisseria meningitidis 8013

46.341

100

0.466
  pilT Neisseria gonorrhoeae MS11

46.037

100

0.463
  pilT Acinetobacter baylyi ADP1

46.177

100

0.463
  pilT Pseudomonas stutzeri DSM 10701

45.872

100

0.46
  pilT Acinetobacter baumannii strain A118

45.566

100

0.457
  pilT Acinetobacter baumannii D1279779

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.26

100

0.454
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Legionella pneumophila strain ERS1305867

45.652

98.773

0.451
  pilT Legionella pneumophila strain Lp02

45.652

98.773

0.451
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.009

97.239

0.399
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

38.82

98.773

0.383
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365