Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   RNT40_RS28950 Genome accession   NZ_CP135236
Coordinates   6290273..6291316 (+) Length   347 a.a.
NCBI ID   WP_016450723.1    Uniprot ID   -
Organism   Delftia tsuruhatensis strain HA60     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6285273..6296316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT40_RS28930 (RNT40_28930) - 6285669..6287264 (-) 1596 WP_126311197.1 AMP-binding protein -
  RNT40_RS28935 (RNT40_28935) - 6287424..6288146 (+) 723 WP_016446678.1 TetR/AcrR family transcriptional regulator -
  RNT40_RS28940 (RNT40_28940) - 6288173..6289456 (+) 1284 WP_016446679.1 branched-chain amino acid ABC transporter substrate-binding protein -
  RNT40_RS28945 (RNT40_28945) - 6289510..6290235 (-) 726 WP_016450722.1 YggS family pyridoxal phosphate-dependent enzyme -
  RNT40_RS28950 (RNT40_28950) pilT 6290273..6291316 (+) 1044 WP_016450723.1 type IV pilus twitching motility protein PilT Machinery gene
  RNT40_RS28955 (RNT40_28955) - 6291348..6291980 (+) 633 WP_016450724.1 cyclic nucleotide-binding domain-containing protein -
  RNT40_RS28960 (RNT40_28960) pilU 6292098..6293234 (+) 1137 WP_016450725.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  RNT40_RS28965 (RNT40_28965) - 6293335..6294246 (+) 912 WP_126311196.1 NAD(P)-dependent oxidoreductase -
  RNT40_RS28970 (RNT40_28970) - 6294446..6295177 (-) 732 WP_016451991.1 BON domain-containing protein -
  RNT40_RS28975 (RNT40_28975) - 6295174..6295782 (-) 609 WP_016451992.1 SIS domain-containing protein -
  RNT40_RS28980 (RNT40_28980) - 6295856..6296272 (-) 417 WP_016450729.1 YraN family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38323.05 Da        Isoelectric Point: 6.8352

>NTDB_id=886262 RNT40_RS28950 WP_016450723.1 6290273..6291316(+) (pilT) [Delftia tsuruhatensis strain HA60]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDPLDHKTVHAMVYDIMSDSQRKAYEEFLEVDFSFEIEGLAR
FRVNAFNQYRGAAAVFRTIPSKILTLEQLNAPRIFADLALKPRGLVLVTGPTGSGKSTTLAGMVNHLNETEYGHILTVED
PIEFVHDSKKCLINQREVGPMTQSFSAALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMVRAMLSESLQAVISQTLCKTKDGQGRIAAHEIMLGTSAIRNLIREAKVAQMYSTIQTSQNVGMQTLDQN
LTDLVRRNLISPAEARAKAKIPDNFPG

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=886262 RNT40_RS28950 WP_016450723.1 6290273..6291316(+) (pilT) [Delftia tsuruhatensis strain HA60]
GTGGACATCACCCAATTGCTGGCTTTCAGCGTCAAGAACAAGGCCTCCGACCTGCACCTGTCCGCGGGGCTTCCGCCGAT
GATCCGCGTGCACGGCGATGTGCGCCGCATCAATGTCGATCCGCTGGACCACAAGACTGTCCACGCCATGGTCTACGACA
TCATGAGCGACTCCCAGCGCAAGGCCTACGAGGAGTTCCTGGAGGTGGACTTCTCGTTCGAGATCGAGGGCCTGGCGCGC
TTTCGTGTCAACGCCTTCAACCAGTACCGGGGCGCGGCCGCCGTCTTCCGTACCATTCCCAGCAAGATCCTGACGCTGGA
GCAGCTCAACGCGCCGCGCATCTTCGCCGACCTGGCCCTGAAGCCGCGCGGCCTGGTGCTGGTGACCGGCCCCACGGGCT
CGGGCAAGTCCACCACGCTGGCCGGCATGGTCAACCACCTCAACGAGACCGAGTACGGCCACATCCTGACGGTGGAGGAC
CCCATCGAATTCGTGCACGACTCCAAGAAGTGCCTGATCAACCAGCGCGAGGTCGGGCCGATGACGCAGTCGTTCTCGGC
CGCCCTGCGCTCGGCGCTGCGCGAGGACCCGGACGCCATCCTGGTGGGCGAAATGCGTGACCTCGAAACCATTCGCCTGG
CCATGACCGCGGCCGAGACGGGCCACCTGGTCTTCGGCACCCTGCACACCTCCAGCGCCGCCAAGACCATCGACCGCATC
ATCGACGTCTTCCCGGCCGAGGAAAAGGAGATGGTGCGCGCCATGCTTTCCGAATCGCTGCAGGCCGTGATCTCGCAGAC
GCTGTGCAAGACCAAGGACGGCCAGGGCCGCATCGCGGCCCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGA
TCCGCGAGGCCAAGGTGGCCCAGATGTACTCCACCATCCAGACGAGTCAGAATGTGGGCATGCAGACGCTGGACCAGAAC
CTGACCGATCTGGTGCGGCGCAACCTGATCAGCCCGGCCGAAGCGCGCGCCAAGGCCAAGATACCGGACAACTTCCCGGG
CTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

75.652

99.424

0.752
  pilT Acinetobacter nosocomialis M2

75.362

99.424

0.749
  pilT Acinetobacter baumannii D1279779

75.362

99.424

0.749
  pilT Acinetobacter baumannii strain A118

75.362

99.424

0.749
  pilT Pseudomonas stutzeri DSM 10701

74.493

99.424

0.741
  pilT Acinetobacter baylyi ADP1

73.043

99.424

0.726
  pilT Legionella pneumophila strain Lp02

73.156

97.695

0.715
  pilT Legionella pneumophila strain ERS1305867

73.156

97.695

0.715
  pilT Neisseria meningitidis 8013

68.235

97.983

0.669
  pilT Neisseria gonorrhoeae MS11

67.941

97.983

0.666
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

66.276

98.271

0.651
  pilT Vibrio cholerae strain A1552

66.276

98.271

0.651
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.014

99.424

0.507
  pilU Vibrio cholerae strain A1552

42.985

96.542

0.415
  pilU Acinetobacter baylyi ADP1

41.329

99.712

0.412
  pilU Pseudomonas stutzeri DSM 10701

41.194

96.542

0.398