Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   RHA96_RS04285 Genome accession   NZ_CP133852
Coordinates   386871..387851 (+) Length   326 a.a.
NCBI ID   WP_139935782.1    Uniprot ID   -
Organism   Citrobacter freundii strain CF2     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381871..392851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHA96_RS04255 (RHA96_04255) ansB 382403..383449 (+) 1047 WP_326971720.1 L-asparaginase 2 -
  RHA96_RS04260 (RHA96_04260) hemW 383547..384683 (-) 1137 WP_139935783.1 radical SAM family heme chaperone HemW -
  RHA96_RS04265 (RHA96_04265) - 384676..385269 (-) 594 WP_003027104.1 XTP/dITP diphosphatase -
  RHA96_RS04270 (RHA96_04270) yggU 385277..385567 (-) 291 WP_003027101.1 DUF167 family protein YggU -
  RHA96_RS04275 (RHA96_04275) - 385564..386130 (-) 567 WP_003825417.1 YggT family protein -
  RHA96_RS04280 (RHA96_04280) - 386149..386853 (-) 705 WP_003838215.1 YggS family pyridoxal phosphate-dependent enzyme -
  RHA96_RS04285 (RHA96_04285) pilT 386871..387851 (+) 981 WP_139935782.1 type IV pilus twitching motility protein PilT Machinery gene
  RHA96_RS04290 (RHA96_04290) ruvX 387848..388264 (-) 417 WP_006686843.1 Holliday junction resolvase RuvX -
  RHA96_RS04295 (RHA96_04295) - 388264..388827 (-) 564 WP_003027086.1 YqgE/AlgH family protein -
  RHA96_RS04300 (RHA96_04300) gshB 389003..389950 (-) 948 WP_003027083.1 glutathione synthase -
  RHA96_RS04305 (RHA96_04305) rsmE 389970..390701 (-) 732 WP_003027080.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RHA96_RS04310 (RHA96_04310) endA 390776..391483 (-) 708 WP_016150969.1 deoxyribonuclease I -
  RHA96_RS04315 (RHA96_04315) - 391578..392075 (-) 498 WP_003838223.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35876.97 Da        Isoelectric Point: 6.3638

>NTDB_id=877164 RHA96_RS04285 WP_139935782.1 386871..387851(+) (pilT) [Citrobacter freundii strain CF2]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRHGKVESAPFTAPDVENLLMCWLSEQQQVQLQEQGQIDFAVTLTDTRRLRA
SAFVHLQGTSLALRLLPLDCPHLDDLQPPAVIPELLHSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYTSRRCLIQQREVGAHCASFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=877164 RHA96_RS04285 WP_139935782.1 386871..387851(+) (pilT) [Citrobacter freundii strain CF2]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
TTGGCGCAGACATGGAAAAGTCGAAAGCGCACCGTTTACCGCGCCTGACGTAGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTTGCAGGAGCAAGGGCAGATTGATTTTGCCGTTACCCTGACGGACACCCGGCGGCTGCGCGCC
AGCGCATTTGTCCATCTGCAGGGAACCTCGCTGGCGCTAAGACTGCTACCGCTGGATTGTCCTCATTTAGACGATCTTCA
GCCTCCCGCGGTCATACCTGAACTGCTTCACAGTGAAAATGGGTTGATTCTGGTGACAGGCGCTACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGGCACATTCTGACGCTGGAAGATCCTATTGAA
TATCGCTACACCAGCCGACGTTGTCTGATTCAACAGCGGGAGGTGGGCGCACACTGCGCCTCTTTCGCCGCCGGTTTGCG
CGGTGCGCTACGCGAAGATCCCGACGTTATTTTGCTGGGCGAGCTGCGCGACGTGGAAACCATTCGGCTGGCATTAACGG
CGGCGGAAACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCGCAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCAACAGAGAAAGATCCTGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTTCTTTCGCAAAAACTGGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAACTACTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACATTTGCACAAAGTTTGCAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(64-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain ERS1305867

45.963

98.773

0.454
  pilT Legionella pneumophila strain Lp02

45.963

98.773

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.64

97.239

0.405
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

38.82

98.773

0.383
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365