Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AABJ89_RS03970 Genome accession   NZ_AP027570
Coordinates   835399..836646 (-) Length   415 a.a.
NCBI ID   WP_032152724.1    Uniprot ID   -
Organism   Escherichia coli strain LR-60     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 830399..841646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ89_RS03955 (VEE03_07710) galE 830888..831907 (+) 1020 WP_021521028.1 UDP-glucose 4-epimerase GalE -
  AABJ89_RS03960 (VEE03_07720) - 831999..834281 (+) 2283 WP_021535434.1 hypothetical protein -
  AABJ89_RS03965 (VEE03_07730) - 834278..834907 (+) 630 WP_021521026.1 CatB-related O-acetyltransferase -
  AABJ89_RS03970 (VEE03_07740) kpsS 835399..836646 (-) 1248 WP_032152724.1 capsular biosynthesis protein Regulator
  AABJ89_RS03975 (VEE03_07750) - 836681..838708 (-) 2028 WP_072649095.1 capsular polysaccharide biosynthesis protein -
  AABJ89_RS03980 (VEE03_07760) kdsB 838705..839445 (-) 741 WP_032152722.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABJ89_RS03985 (VEE03_07770) - 839455..841131 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49399.08 Da        Isoelectric Point: 10.1281

>NTDB_id=87487 AABJ89_RS03970 WP_032152724.1 835399..836646(-) (kpsS) [Escherichia coli strain LR-60]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGDVKKGLVWII
RTDFSYIKNNTIQSP

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=87487 AABJ89_RS03970 WP_032152724.1 835399..836646(-) (kpsS) [Escherichia coli strain LR-60]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTTCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCATGCTAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTTAAGACACAGGTTAATGGGGTTTATTATGGGGATGTAAAGAAAGGGTTAGTGTGGATTATA
AGAACAGATTTTTCTTACATCAAAAATAATACAATACAATCACCGTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

94.217

0.376

Multiple sequence alignment